| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1816 |
|---|
| Symbol | ureC |
|---|
| ID | 4809800 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 2150837 |
|---|
| End bp | 2152555 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640107230 |
|---|
| Product | urease subunit alpha |
|---|
| Protein accession | YP_001038230 |
|---|
| Protein GI | 125974320 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0804] Urea amidohydrolase (urease) alpha subunit |
|---|
| TIGRFAM ID | [TIGR01792] urease, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTAA AAATAAGCGG CAAAGATTAT GCCGGTATGT ATGGCCCGAC AAAAGGCGAC
AGGGTGAGGC TGGCAGACAC GGATCTCATT ATTGAGATTG AGGAAGATTA CACGGTTTAT
GGAGATGAGT GCAAATTCGG AGGAGGTAAA TCCATAAGGG ACGGAATGGG CCAGTCTCCT
TCGGCTGCAA GAGATGACAA GGTTTTGGAT TTGGTAATTA CCAATGCCAT AATCTTTGAC
ACATGGGGGA TTGTAAAGGG AGATATAGGT ATAAAAGACG GAAAAATAGC CGGAATCGGG
AAGGCGGGAA ATCCGAAAGT AATGAGCGGC GTGTCGGAGG ATTTAATAAT CGGGGCCTCT
ACCGAAGTTA TTACCGGAGA AGGACTTATT GTGACTCCGG GAGGAATTGA TACACATATA
CATTTTATAT GCCCCCAGCA GATTGAGACC GCATTGTTCA GCGGTATCAC AACAATGATT
GGTGGCGGAA CGGGACCGGC AGACGGAACC AATGCCACCA CTTGCACACC GGGAGCCTTT
AACATCCGGA AAATGTTAGA GGCGGCAGAG GACTTTCCGG TAAATTTAGG TTTTTTGGGG
AAAGGGAATG CTTCTTTTGA GACTCCTCTG ATAGAACAGA TTGAAGCAGG GGCGATTGGC
TTAAAGCTCC ATGAGGATTG GGGAACCACA CCCAAGGCTA TAGATACATG CCTGAAAGTT
GCGGATCTTT TTGATGTACA GGTGGCTATA CATACCGATA CACTGAACGA GGCAGGATTT
GTAGAGAATA CTATAGCGGC TATAGCCGGA AGGACAATTC ACACTTACCA TACCGAGGGA
GCGGGCGGCG GGCACGCACC GGACATAATT AAAATTGCAT CACGCATGAA TGTACTGCCC
TCGTCTACCA ATCCCACCAT GCCTTTTACC GTCAATACAT TGGATGAACA TCTCGATATG
CTTATGGTAT GCCATCATCT TGACAGCAAG GTAAAAGAGG ACGTTGCTTT TGCCGATTCG
AGGATCCGGC CTGAGACAAT AGCCGCAGAA GACATACTGC ACGATATGGG AGTATTCAGC
ATGATGAGTT CCGATTCCCA GGCCATGGGA CGCGTGGGAG AGGTTATTAT AAGGACCTGG
CAGACTGCAC ATAAAATGAA GCTTCAAAGA GGTGCCCTGC CGGGGGAAAA GAGCGGCTGT
GACAATATAA GGGCTAAAAG ATACCTTGCC AAGTATACCA TAAACCCTGC TATAACCCAT
GGAATTTCAC AGTATGTGGG CTCCCTGGAG AAAGGGAAAA TAGCCGACTT GGTCCTCTGG
AAGCCTGCAA TGTTTGGTGT AAAGCCTGAA ATGATTATTA AGGGCGGCTT TATAATAGCC
GGCAGGATGG GCGATGCAAA TGCGTCCATA CCCACACCTC AGCCTGTAAT ATATAAAAAC
ATGTTCGGTG CCTTCGGAAA GGCAAAGTAC GGAACCTGTG TGACTTTTGT TTCAAAGGCT
TCGCTGGAAA ATGGCGTTGT GGAAAAGATG GGGCTTCAAA GAAAAGTGCT TCCGGTCCAG
GGATGCAGGA ATATCTCAAA AAAATATATG GTACACAACA ATGCAACGCC TGAAATTGAA
GTTGATCCTG AAACCTATGA GGTAAAGGTG GACGGTGAGA TTATCACCTG CGAACCATTA
AAGGTCTTAC CCATGGCGCA GAGATATTTC TTGTTTTAA
|
|---|
| Protein sequence | MSVKISGKDY AGMYGPTKGD RVRLADTDLI IEIEEDYTVY GDECKFGGGK SIRDGMGQSP
SAARDDKVLD LVITNAIIFD TWGIVKGDIG IKDGKIAGIG KAGNPKVMSG VSEDLIIGAS
TEVITGEGLI VTPGGIDTHI HFICPQQIET ALFSGITTMI GGGTGPADGT NATTCTPGAF
NIRKMLEAAE DFPVNLGFLG KGNASFETPL IEQIEAGAIG LKLHEDWGTT PKAIDTCLKV
ADLFDVQVAI HTDTLNEAGF VENTIAAIAG RTIHTYHTEG AGGGHAPDII KIASRMNVLP
SSTNPTMPFT VNTLDEHLDM LMVCHHLDSK VKEDVAFADS RIRPETIAAE DILHDMGVFS
MMSSDSQAMG RVGEVIIRTW QTAHKMKLQR GALPGEKSGC DNIRAKRYLA KYTINPAITH
GISQYVGSLE KGKIADLVLW KPAMFGVKPE MIIKGGFIIA GRMGDANASI PTPQPVIYKN
MFGAFGKAKY GTCVTFVSKA SLENGVVEKM GLQRKVLPVQ GCRNISKKYM VHNNATPEIE
VDPETYEVKV DGEIITCEPL KVLPMAQRYF LF
|
|---|
| |