Gene Cthe_1734 details

Gene Information

• Locus tag: Cthe_1734
• ID: 4810164
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: -
• Start bp: 2054533
• End bp: 2056407
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 30%
• IMG OID: 640107147
• Product: P4 family phage/plasmid primase
• Protein accession: YP_001038148
• Protein GI: 125974238
• COG category: [R] General function prediction only
• COG ID: [COG3378] Predicted ATPase
• TIGRFAM ID: [TIGR01613] phage/plasmid primase, P4 family, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATATTT TCAAAGGATA CATTCCTTTA AAAGGAAAAA AACCTTTAGA GGGATATAAG 
GACAGAAATA AATTTTATTG TTATGACTAT ATAAGAAAAA CAGGCAAAGA TTACGGTGCA 
GTTTTACAAG ATGATATTAT TCAAATAGAT TTTGATTCAA TAGAAGAAGC AAATGTTGTA 
AAAAACATAA TAACAGATTT AGATATTAAA TGTTGCATAT TAAAGACAGA TAGAGGGATG 
CATTTTTATT TTAAAAACAC AGATTTAAAA ACAAGAAAAA TCAAGACAAA GACTCCTTTA 
GGAGTAACAA TTGACATAGG ACTTGGCTCA AAGAATTGTA TTGTGCCATT GAGAGTGAAT 
GGGGTAACAA GAAGATGGTT AAACAAAACA GAAGAAGTTG ACTATCTTCC AGAATGGCTA 
AGACCATTAA AAACAGCACC GGATTTTCTA AATATGAAAG AAGGAGATGG AAGAAATCAA 
GCATTATTCA ATTATATATT AACCCTTCAA TCAGAAGGTT TTAGTAAGGA TAGTATTAAA 
AACATTATAA ATATCATAAA CAAATATATT TTAAAAGAAC CATTAGAACA AAGAGAAATA 
GATACAATAC TTCGAGATGA AGCATTTTTA AAACCTTTGT TTTATCAAAA GTCAAAATTC 
TTACATGACC AGTTTGCAAG ATTTATAAGG GATGAAGAGC ACATTATTAA AATTAATAAC 
CAGCTCCATG TTTATAAGGA CGGAATTTAT AAAAATAGTA CTTTGGAAAT TGAATCAGTT 
ATGATTAAAC ATTTACCAGA GCTTAATAAA GCAAAGAGGA ATGAAACTAT AAATTACCTA 
GAACTTATTA CTAATAACGT TATTCCAAGC TTTGAAGATT ATAATCGCAT AGCATTTAAC 
AATGGAATTT ATAACATAAT AGATGATTCT TTTACAGAAC ATTCTCCAGA TTTTATCATC 
ACTAACAGAA TTCCGTGGGA TTATAACCCA AATGCTTATT TTGAATTAGC AGATAAAACC 
TTAGATAAAA TCAGCTGCAA TGATGCTGAA ATTAGAAGTG TGCTTGAAGA ACTTATAGGA 
TACACATTTT ATAGAAGAAA TGAAATTGGA AAAGCTTTCA TTTTAACTGG TGAAAAACAA 
AATGGGAAAT CAACATTTTT GGATATGGTA ACTACACTTA TAGGTATTTC TAATATTGCA 
GCTCTTGATT TAAAGGAGTT GGGAGAGCGA TTTAAAACAG CAGAATTATT TGGAAAGCTT 
GCAAATATTG GTGACGATAT TGGAGATGAA TTTATTGCAG AGCCTTCAAT GTTTAAGAAG 
CTTGTTACAG GGGATAGAGT TAATGCAGAG AGGAAAGGCA AAGACCCTTT TGATTTTAAT 
AATTACTCCA AGCTTTTATT TTCAGCCAAT AATGTTCCAA GGGTTAAGGA TAAAACAGGA 
GCTGTCCAAA GAAGACTTCT TATAATTCCG TTTAAGGCAA AGTTTACAGC AGATGATCCT 
GATTTCAGAC CAGATATTAA ATATGAATTA AGGACAAAAG AGTCCATGGA ATATTTGATT 
TTACTGGGTT TAAAGGGGCT TAAAAGAATC CTACAAAATA AAAAGTTCAC AAAATCCATA 
CAAGTGGAGC ATGAGCTTAA AGAATATGAG AAGACCAACA ATCCAATTAT TGAATTCTAT 
GAAGAATATG AAACAAAAGT AGAAAATGAG CCAACGAAAA ATGTCTATAA GAATTATTTG 
GAGTTTTGTT TAAATAATAA TCTGCAGCCA CTTAGTCATA TAGAATTTTC AAGACAGATT 
ACCAAGAGGT TCGGTTATAA AACTATAGAT AAAAAAATTG ATGGGAAGAA ATATAGGATA 
TTTGTGAAAA TGTAA 

 

Protein sequence

MDIFKGYIPL KGKKPLEGYK DRNKFYCYDY IRKTGKDYGA VLQDDIIQID FDSIEEANVV 
KNIITDLDIK CCILKTDRGM HFYFKNTDLK TRKIKTKTPL GVTIDIGLGS KNCIVPLRVN 
GVTRRWLNKT EEVDYLPEWL RPLKTAPDFL NMKEGDGRNQ ALFNYILTLQ SEGFSKDSIK 
NIINIINKYI LKEPLEQREI DTILRDEAFL KPLFYQKSKF LHDQFARFIR DEEHIIKINN 
QLHVYKDGIY KNSTLEIESV MIKHLPELNK AKRNETINYL ELITNNVIPS FEDYNRIAFN 
NGIYNIIDDS FTEHSPDFII TNRIPWDYNP NAYFELADKT LDKISCNDAE IRSVLEELIG 
YTFYRRNEIG KAFILTGEKQ NGKSTFLDMV TTLIGISNIA ALDLKELGER FKTAELFGKL 
ANIGDDIGDE FIAEPSMFKK LVTGDRVNAE RKGKDPFDFN NYSKLLFSAN NVPRVKDKTG 
AVQRRLLIIP FKAKFTADDP DFRPDIKYEL RTKESMEYLI LLGLKGLKRI LQNKKFTKSI 
QVEHELKEYE KTNNPIIEFY EEYETKVENE PTKNVYKNYL EFCLNNNLQP LSHIEFSRQI 
TKRFGYKTID KKIDGKKYRI FVKM