| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1709 |
|---|
| Symbol | |
|---|
| ID | 4808884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 2031877 |
|---|
| End bp | 2034156 |
|---|
| Gene Length | 2280 bp |
|---|
| Protein Length | 759 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640107122 |
|---|
| Product | Phage-related protein-like protein |
|---|
| Protein accession | YP_001038123 |
|---|
| Protein GI | 125974213 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5412] Phage-related protein |
|---|
| TIGRFAM ID | [TIGR01760] phage tail tape measure protein, TP901 family, core region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGAG ATGCAAATAC CGTAGTTGCA AGGGTAGGAC TTGATGATAG AGGTTTTCAA
GAAGGTGTAG CAAAAATTCA AAGAAGTCTA AAGGTTGTTC AAAGTGAATT TGCAGCAGCT
TCTTCTAAGC TTGGTGATTT TGGCAAATCT GAAGAAGGAC TAAGACTTAA ATCAGATACC
TTAAATAAAC AGATAGAACT TCAGAAGGAT AAAGTTGCGG CATTAGAAAA AGCATATCAA
AAGAGTGTAG AAACAAAGGG TGAAGATGCA AAGGCTACTG AAAATCTTAA AATTAAGCTT
AATTATGCTA CAGCAGAACT AAATAAAATG GAGAATGAGC TGAAAGAGGC AACAAGAGAA
CTTAAGGAAA AAAGCTCGGC TTGGTATAAG CTGTCTGAAA GCATGAATAG TGCAGGAGAA
AAGATGAAAT CTGTAGGAGA TAAGATGTCT TCTATAGGAA GTAAGCTTTC TACTGCTGTA
ACACTTCCTT TAGTTGGAAT AGGAACTGCT GCAACAAAAA TGGCTATGGA TGCAGTGGAA
TCTGAAAATC TCTTTGAAGT AGCTATGGGT TCAATGGCAG GCGATGCAAG AAAGTGGTCA
GAAGAAACCT CAAAAGCTCT AGGACTCAAT GCTTTCAATG TAAGAAAAAA TGTAGCAACT
TATAATGCCA TGCTTACCTC TATGGGGTTA ACTTCACAAG AGTCATTAAA GATGTCAGAA
GGATTAACTC AGCTTTCCTA TGATATGGCT TCTTTCTATA ACTTAAAACC AGAAGAGGCA
TTTGAGAAAT TAAAATCTGG TATTAGTGGA GAGGCAGAAC CACTTAAAGC TTTAGGTATA
TTAGTTAATG ATAATACAAT TAAAACCTAT GCTTATTCTC ATGGAATTGC AAAGCAGGGT
GAACAGCTTA CTGAAGCACA AAAGGTTCAA GCAAGGTATG GTGCTATAAT GGAAGCTACA
AAAAATGCTC AAGGTGACCT TGCAAGAACT ATGGATTCAC CAACCAATAA GCTTAGAGTT
ATGAAAGAGC AAACACAGCA GCTTGGCATT CAGTTTGGAC AACTTTTAAT TCCTATACTT
GAAAAACTAA TGAACACTAT AAAACCTCTT TTAGATAAGT TCCAAGGGCT ATCAAAGGAA
CAGCAAGAAA CAATTATTAA AATCGGATTA GTAGTTGCAG CAATAGGTCC AGTAATCATG
ATTATAGGTA AGGTAATAAG TATTGCAGGA ACTCTTTCTA CTGTAATTGG AACAGTGAGT
GGAGCAATGG CAGCAGCAGG TGGTGCATCT GGAGCCTTAG GAGCTGCTTT TGCAGCAATA
ACTGGTCCAG TTGGCATTGC AGTAGCGGCT ATTACAGGTC TTATTGCTAT TTTTGTAGCC
TTATACAAAA ATAATGAGGA CTTTAGGAAT TCAGTAAATA CAGTATGGAA TGGAGTTAAA
GCTTTAATAA GTGGTGTCAT TGAAAGCTTA AAGGCTATGT TTCAAGCCTT TATTACCTTA
GCAAATCAAA TATGGAAAAA GTATGGTGAT GATTTTGTAA AGATAATAAC AACTGCTTTT
AATTTAGTAG CAACTATTGT AAATACCACA CTTAAAGCCA TTCAAGATGT TATAAAAATA
GTTACCAGTG CAATAAAAGG TGATTGGAAG GGTGTATGGG AAGGAATAAA AAATCTTACC
TCTGACTTAT GGAATGGAAT AAAGAATGTG ATAAAATCAG CCATTGATTT AGTTAAAGGA
ACTATAAAAA CAGAATTTGA ATTTATCAAA GGCATAATCT TAGGAATATG GAATGGCATT
AAAGGAATAA CTTCAGCAGT TTGGAATGAG ATAAAATCAG CTATTGAAAA TCCAATAAAT
GCAGCAAAGA ATGCTGTAGG TAATGCTATA AATGCAATTA AAGGATTTTT CAGCAATCTA
CATTTACCAG AAATAAAAAT ACCTAAAATA AAACTTCCTC ATTTTAGTAT TGAGGGAGAG
TTTAGTTTGA AACCTCCAAG TGTACCTTAC CTAGGTGTAG ATTGGTATGC GAAGGGTGGT
ATATTTAATA GACCTAGTAT AATCGGTGTC GGTGAAGCAG GAACTGAAGC TGTACTTCCT
ATAGATAGGT TAGATGAGCT TATGGCAAGG GCAATTGAAA AAGCAAAAGG AGGAAGTGGA
AGCGGATTAA CACTTCATAT AGAAAATTTC ATTAATAATT CAGATAAGGA TATAGAGCAG
CTTGCCTATG AGCTTGAATT TTACAGGCAG AGAGTTTCAA TGGGAAGGGG TGGTGCTTAA
|
|---|
| Protein sequence | MARDANTVVA RVGLDDRGFQ EGVAKIQRSL KVVQSEFAAA SSKLGDFGKS EEGLRLKSDT
LNKQIELQKD KVAALEKAYQ KSVETKGEDA KATENLKIKL NYATAELNKM ENELKEATRE
LKEKSSAWYK LSESMNSAGE KMKSVGDKMS SIGSKLSTAV TLPLVGIGTA ATKMAMDAVE
SENLFEVAMG SMAGDARKWS EETSKALGLN AFNVRKNVAT YNAMLTSMGL TSQESLKMSE
GLTQLSYDMA SFYNLKPEEA FEKLKSGISG EAEPLKALGI LVNDNTIKTY AYSHGIAKQG
EQLTEAQKVQ ARYGAIMEAT KNAQGDLART MDSPTNKLRV MKEQTQQLGI QFGQLLIPIL
EKLMNTIKPL LDKFQGLSKE QQETIIKIGL VVAAIGPVIM IIGKVISIAG TLSTVIGTVS
GAMAAAGGAS GALGAAFAAI TGPVGIAVAA ITGLIAIFVA LYKNNEDFRN SVNTVWNGVK
ALISGVIESL KAMFQAFITL ANQIWKKYGD DFVKIITTAF NLVATIVNTT LKAIQDVIKI
VTSAIKGDWK GVWEGIKNLT SDLWNGIKNV IKSAIDLVKG TIKTEFEFIK GIILGIWNGI
KGITSAVWNE IKSAIENPIN AAKNAVGNAI NAIKGFFSNL HLPEIKIPKI KLPHFSIEGE
FSLKPPSVPY LGVDWYAKGG IFNRPSIIGV GEAGTEAVLP IDRLDELMAR AIEKAKGGSG
SGLTLHIENF INNSDKDIEQ LAYELEFYRQ RVSMGRGGA
|
|---|
| |