| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1575 |
|---|
| Symbol | deoD |
|---|
| ID | 4809566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 1904117 |
|---|
| End bp | 1904827 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640106993 |
|---|
| Product | purine nucleoside phosphorylase |
|---|
| Protein accession | YP_001037994 |
|---|
| Protein GI | 125974084 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0813] Purine-nucleoside phosphorylase |
|---|
| TIGRFAM ID | [TIGR00107] purine-nucleoside phosphorylase, family 1 (deoD) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 70 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGAG TGCCCACTGC GCACAACGCA GCGGTGGAAG GACAAATTGC AAAAACGGTT
TTGATGCCCG GTGATCCACT TCGTGCAAAA TTTATTGCCG AAACCTATCT GGAAAATGTC
ACTTGTTTTA ATACAGTGCG CAATATGTTA GGTTTTACCG GCACCTATCA GGGAAAGCCG
GTGTCTGTTA TGGGTCACGG GATGGGTATT CCCTCTATCG GTATTTATTC ATACGAGCTT
TTCAATTTCT ACGATGTGGA CAATATCATC CGCATAGGCT CGGCCGGTGC CTTAAGCGAC
GATCTGGATC TAAAAGATCT CGTTATCGCC ATGGGAGCCT GCACCGACTC CAATTACGCC
AACCAATACC AGCTCCCCGG AACGTTTGCA CCTATTGCCA GCTACACGCT GATGCAAAAA
GCCATTGAGG AAGCACAGAA AAAAGGAATC AGCGTCGCCA TCGGCAATGT TCTTTCCACG
GATGTGTTTT ACAACGCCAA TAAAGGCGCT AACGATGCCT GGAAAAGCAT GGGCGTGTTG
TGTATCGAAA TGGAAGCGGC AGCTTTATAC ATGAATGCGG CCCAGGCAGG AAAAAATGCT
TTGTGTATCC TGTCCATCTC CGACCACATC TACAAAGGTA CAGAACTGTC GGCTCAGGAA
CGCCAGCTCG GTTTCAAAAA TATGATTGAA GTCGCCCTTG GAATTATCTA A
|
|---|
| Protein sequence | MSRVPTAHNA AVEGQIAKTV LMPGDPLRAK FIAETYLENV TCFNTVRNML GFTGTYQGKP
VSVMGHGMGI PSIGIYSYEL FNFYDVDNII RIGSAGALSD DLDLKDLVIA MGACTDSNYA
NQYQLPGTFA PIASYTLMQK AIEEAQKKGI SVAIGNVLST DVFYNANKGA NDAWKSMGVL
CIEMEAAALY MNAAQAGKNA LCILSISDHI YKGTELSAQE RQLGFKNMIE VALGII
|
|---|
| |