| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1526 |
|---|
| Symbol | |
|---|
| ID | 4810564 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 1852039 |
|---|
| End bp | 1852803 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640106946 |
|---|
| Product | ABC transporter related protein |
|---|
| Protein accession | YP_001037947 |
|---|
| Protein GI | 125974037 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR03608] putative bacteriocin export ABC transporter, lactococcin 972 group |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCAG TACTTGAAGC AAAGAACCTG AGGAAGGAAT ATGGTTCAAA GGGAATGGCT
TTTACGGCTT TGGACGGTAT TGACTTAAAA GTATACAAAG GGGAATTCCT GGGAATAATG
GGTCCGTCAG GAGCAGGCAA AACCACCTTG CTAAATATCC TGTCTACAAT CGACAGACCT
ACATCAGGCA ATATTTTTTA TGATGGCAGG GATGTTTTAA CTATGAAAAA CAGGGAACTT
TCATTGTTCA GAAGAAACAA GATCGGATTT TTGTTTCAGG ACTTCAATCT TTTGGACAAT
ATGTCGGTTG AAGATAACAT AGCGTTGCCC CTCGCACTTT CAAATGTAAA TGTAAAGGAA
ATAAAAGAAA AGGTGGAAAA GTTAAGTGAG TTCTTTGGAT TAAAGGAACA TCTTAAGAAA
TACCCTTATC AGCTGTCAGG GGGGCAAAAG CAAAGAGCGG CCGCAGCCAG AGCACTTATC
ACATCGCCGT CCATAGTTTT TGCTGATGAA CCTACAGGAG CGTTGGATTC CAAATCTTCG
CAGGAATTAT TGCAATGCCT TTTGAGGATG AATGAGGAAT TGAATGCAAC TATAATAATG
GTTACCCATG ATGCTTTTGC AGCCAGTTAC TGCAAAAGAA TTTTATACCT GAAGGATGGA
AAAATTCATG CAAGATTGGA TAAAGACTCG ACCAGAAAAG AGTTCTTTAA AAGAATTATC
GACTTTGTCG GAACTATGGG AGGTGGCGTG GGTGAACTCA TTTAA
|
|---|
| Protein sequence | MEAVLEAKNL RKEYGSKGMA FTALDGIDLK VYKGEFLGIM GPSGAGKTTL LNILSTIDRP
TSGNIFYDGR DVLTMKNREL SLFRRNKIGF LFQDFNLLDN MSVEDNIALP LALSNVNVKE
IKEKVEKLSE FFGLKEHLKK YPYQLSGGQK QRAAAARALI TSPSIVFADE PTGALDSKSS
QELLQCLLRM NEELNATIIM VTHDAFAASY CKRILYLKDG KIHARLDKDS TRKEFFKRII
DFVGTMGGGV GELI
|
|---|
| |