| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1504 |
|---|
| Symbol | |
|---|
| ID | 4810542 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 1827280 |
|---|
| End bp | 1828092 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640106924 |
|---|
| Product | Linocin_M18 bacteriocin protein |
|---|
| Protein accession | YP_001037925 |
|---|
| Protein GI | 125974015 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1659] Uncharacterized protein, linocin/CFP29 homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCT TATCAAGAGA AGGTTCTCCA ATATCTGCCG AACTTTGGGA AAAAATTGAC
GAGGCCGTTG TATCGGCAGC AAAGAAAATC CTGACAGGAA GAAGATTTAT AAGCATTTAC
GGACCCTTGG GCGCAGGTAT TCAAGCCATT AATGTTGACA ATATATCAGA ATTGGACGAA
ACCGAAGAAA ACATTTCGGT TATCAGGGGA AGAACATACC GGCATATTCC TTTGATTAAT
GAAGACTTTT CACTTCTGTG GAGGGACTTG GAATTCAGCG AGCAAATGGG GTTGCCTGTT
GATTTGTCCT CAGCTTCCAG AGCTGCCACC CAATGCGCTT TAAGAGAGGA TAAATTGATC
TTTTACGGCA ATGATGAATT GGGATACAAA GGCTTGCTGA CAGAAGACGG AATTGTTAAA
TTCCCCATAT CGAACTGGAG CGAAGGCGAA AATCCTTTCA AAGACATATC AATAGGATTG
GCCAAATTCA TAGAGAACGG AATCGTAGGA AGAAAGGCTC TTGTTGTAAG CCCAAATCTT
TTTGTTCAAC TGCAAAGAAT ACAGCCGGGC ACGGGAACAA CTGAATATGA CAGAATAAAT
AAGCTTCTGG ACGGCAATAT TTTCAGCACG CCGGTATTAA AGGATGACAA AGCTGTTCTT
GTCTGTTCCG AACCTCAAAA TATAGATTTG GTAATTGGAC AAGATATGAT TACGTCTTAT
CTTGAAACCA AAAACCTGAA TCATTATTTC CGCATCATGG AAACAATTCT TCTGAGGATT
AAGAATAAAA AAGCTGTTAT TGTTTTTGAT TAA
|
|---|
| Protein sequence | MDFLSREGSP ISAELWEKID EAVVSAAKKI LTGRRFISIY GPLGAGIQAI NVDNISELDE
TEENISVIRG RTYRHIPLIN EDFSLLWRDL EFSEQMGLPV DLSSASRAAT QCALREDKLI
FYGNDELGYK GLLTEDGIVK FPISNWSEGE NPFKDISIGL AKFIENGIVG RKALVVSPNL
FVQLQRIQPG TGTTEYDRIN KLLDGNIFST PVLKDDKAVL VCSEPQNIDL VIGQDMITSY
LETKNLNHYF RIMETILLRI KNKKAVIVFD
|
|---|
| |