Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cthe_1501 |
Symbol | |
ID | 4810539 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium thermocellum ATCC 27405 |
Kingdom | Bacteria |
Replicon accession | NC_009012 |
Strand | - |
Start bp | 1824403 |
End bp | 1826139 |
Gene Length | 1737 bp |
Protein Length | 578 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 640106921 |
Product | ABC transporter, transmembrane region |
Protein accession | YP_001037922 |
Protein GI | 125974012 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.014393 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGGCGGT ATTGGAAGTA TGTAAAACCG TATTTATCTG CATTTATCAT AGGGCCGATT TTTATGATTG TGGAAGTTAT CGGTGAAGTG ATTATGCCTC TGCTACTGAG CAATATCATT GATAAGGGAG TTATTGGCGG CAGAGGTATT TCATATATAG TAACAATGGG TATAATAATG ATAGTCACAG CGCTGTTCAT GATGACAGGC GGTGTGGGAG GAGCCTATTT TGCAATTAAA GCATCCACGG GATTTGCCAA CGATTTGAGA AAAGATTTGT TCAGGCAAAT TCAGAAATTT TCCTTTAACA ATATCGATCA ATATAATACC GGTTCTTTGA TTACACGGTT AACCAATGAT ATAACCCAGA TACAAAATAT GATTCAAATG ATGCTGAGAT TGGCCCTGAG GGCTCCCGGT ATGCTCATTG GTGCTCTTAT AATGGCTTTT GCCATGAATG CCAGACTGGC ATTGGTAATC CTGTGCATAA TACCTTTGCT GTCCCTGGCA GTCTACTTCA TAATTAAAGT TGCATTTCCT CTGTTTATAA CCATGCAGAA AAAGCTGGAC GCGCTTAACT CCACCACTCA GGAAAATTTA ACCAATATCA GGGTGGTAAA ATCATTTGTC AGAGAACAGT ATGAAGAAGA AAAATTCAAA AAAGCCAACA TAGACTTGAA AGAAAGCACA ATGAAGGCAA TGAAGATTGT TATCTTTACC ATACCGGCCA TGAGCCTTGC AATGAACATC ACAATTTTGG CAGTGGTTTG GTTTGGCGGA AAACAGATTA TTGCGGGCAG TATGACCTCC GGTGTCCTTA CCGCATTTGT AAATTATGTT ATCCAGATAC TCATATCACT TGTAATGGTT TCATTTATTA TTCTAAACAG CTCCAGAACC CTTGCATCCG TAAGGCGTAT CAATGAGGTG CTTGATACAG ATATCGACCT GACTGACGAG AATGCCGTGT ACAAGGATAA AACTGTTGAA TACGGCAAAA TCGAATTTAG AGAAGTTTAC TTTAAATACT ATAAAAACAA TGAAAAATGG GTTTTGGAAA ATATCAACCT CGTGATAAAT CCGGGTGAGA CGGTCGGTAT TATCGGCTCA ACCGGCAGCG GCAAATCAAG CCTTGTGCAG CTGATTCCAA GACTGTATGA TGTGGATTTT GGCGAAGTGC TGGTGGACGA CGTCAATGTT AAAGATTATT CGCTTAAAAA TCTTAGAAAC GGCGTTGGCA TTGTACTGCA AAAGAATGTC CTGTTTTCCG GTACTATAAT GGAAAACCTC AAATGGGGAG ACGAAAATGC CGGTGACGAT GAGGTGTACA AGTTTGCAGA AAGTGCTCAG GCACATGGTT TTATCACTTC CTTTGAAAAG GGATATGATA CCGAGCTTGG ACAGGGCGGT GTCAATGTAT CCGGAGGACA AAAGCAAAGA TTGTGCATTG CCAGGGCATT GTTGAAAAAG CCCAAAATTT TAATACTTGA TGACAGTACC AGCGCAGTTG ATACTGCGAC TGAGGCAAAA ATCAGAGAAA GTTTCAGAAA TGAGTTGAAA GGTACAACGA AAATTATCAT TGCGCAAAGA ATCTCTTCGG TAATTGACGC GGACAAAATA ATTGTACTTG ATGACGGAAA AATTGTCGGC ATAGGTAATC ACGAAGAATT AATGAAGAAT TGCGAAACAT ATTCAGAGAT TTATTACTCA CAGATGGATA AGAAGGTGAC TGCATAA
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Protein sequence | MRRYWKYVKP YLSAFIIGPI FMIVEVIGEV IMPLLLSNII DKGVIGGRGI SYIVTMGIIM IVTALFMMTG GVGGAYFAIK ASTGFANDLR KDLFRQIQKF SFNNIDQYNT GSLITRLTND ITQIQNMIQM MLRLALRAPG MLIGALIMAF AMNARLALVI LCIIPLLSLA VYFIIKVAFP LFITMQKKLD ALNSTTQENL TNIRVVKSFV REQYEEEKFK KANIDLKEST MKAMKIVIFT IPAMSLAMNI TILAVVWFGG KQIIAGSMTS GVLTAFVNYV IQILISLVMV SFIILNSSRT LASVRRINEV LDTDIDLTDE NAVYKDKTVE YGKIEFREVY FKYYKNNEKW VLENINLVIN PGETVGIIGS TGSGKSSLVQ LIPRLYDVDF GEVLVDDVNV KDYSLKNLRN GVGIVLQKNV LFSGTIMENL KWGDENAGDD EVYKFAESAQ AHGFITSFEK GYDTELGQGG VNVSGGQKQR LCIARALLKK PKILILDDST SAVDTATEAK IRESFRNELK GTTKIIIAQR ISSVIDADKI IVLDDGKIVG IGNHEELMKN CETYSEIYYS QMDKKVTA
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