| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1481 |
|---|
| Symbol | |
|---|
| ID | 4810631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 1800208 |
|---|
| End bp | 1802520 |
|---|
| Gene Length | 2313 bp |
|---|
| Protein Length | 770 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640106902 |
|---|
| Product | membrane protein-like protein |
|---|
| Protein accession | YP_001037903 |
|---|
| Protein GI | 125973993 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1511] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR03057] X-X-X-Leu-X-X-Gly heptad repeats |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0291099 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGTA AAATGATAAA AATCATTTCT CTTTGCCTGT GTATAGCCAT CCTTGCCAGC
GGAGCGGCTT ACGCCCTCGC ATCAGGTAAA GACAAAGCTG AAAATGTTAA AACAGCGGAA
AACATTACGG AAAACACTGC AGAAAAACAA CATGAAGAAG CTGCGGCAAA AAGCGATACT
TTCAAAGATG AAACAGTATA TGTTCTTGCA AACCCTGACG GTACGGTGCA AAAAATTATT
GTAAGCGACT GGATAAAAAA CACGCTTTCA AGTGAAAAAA TCACTGATGT AACCGAACTT
GAAAATACAG AAAATATCAA AGGTGACGAA AGTTATACCC TGGGAGGTAA CAACACCCGT
GTATGGGATG CGCAGGGAAA TGACATCTAT TATCAGGGCA CAATTGAAAA AGAACTGCCG
GTGGATCTTT CGGTTTCTTA CAAACTTGAC GGAAAAACAG TATCCGCAGA CGAGCTCATA
GGCAAAAGCG GCAAAGTAAC CATCCGCTTC GACTACAAAA ACAAGCAATA TGAAACCGTA
AAAATAAACG GCAAAGATGA AAAAATCTAC GTTCCCTTTG TAATGCTGAC GGGAGTGCTC
CTTGACAACG ACAACTTTAC CAATGTTCAG GTTTCAAACG GAAAAATCAT TAACGATGGA
AACAAAACGG CAGTTTTAGG GTTTGCTTTA CCGGGGCTTC AGGAAAATCT TGCAATAGAC
AAGGAAAAGT TTGAAATACC GTCTTATGTG GAGATAACAG CCGATACCAC CGATTTTTCT
CTGGGAATTA CCGTTACTGT AGCAACCAAC TCATTATTTA ACAATATAGA TGTGGAAAAA
ATTGATTCGA TATCTGATTT GACCGATTCA ATGAATGAAC TTGATGATGC CATGACAAAA
CTTCTTGACG GTTCTTCTTC GCTGTACAAC GGCATCTGCA CGCTTCTTGA CAAGTCAAAG
GAACTTGTTG AAGGAATTAA TCAACTTGCA GAGGGTGCCG GAAAGCTGAA AGAAGGAGCA
TATTCCCTTG ACGAGGGAGC GAAAAAACTG TATACCGGAG CGGCAGCGTT GTCACAGGGC
CTTGATACGC TTTCGGCAAA CAATGATACA TTAAACGACG GTGCAAAAAA AGTTTTTGAA
ACTATCCTTT CCACCGCCGA GACACAATTA AAAGCATCCG GGCTTACAGT TCCTGAATTG
ACCATCGAAA ATTACGCTTC AGTACTCAAT GAAATTATTG AATCCCTTGA CAGTACAAAA
GTATATAATC AGGCTCTCGA ACAGGTTACA GCAGCCGTTG AAGAAAAACG GGACTATATC
AAATCACAGG TCGTTGAAGC CGTGCGTTCG GAAGTCGAAG CCAATGTCAC CGCCGCAGTT
ACGGAACAGG TTAAAGCAGA GGTTACAAAA GCAGTAAAAG AACAAGTGTC GGAAAAGGTC
ACTGCAAATG TTCGTGAGAA CGTTGAAGAA CAAGTAATTC TTGCTGCAAC AGGTATGAAC
AAGGCAAGCT ATTATGCCGC AGTTTCAGCC GGACGCGTGG ATGCGGCAAC ACAAAAGGCC
GTCAAATCCG CCATTGACAA CAAAATGGCA AGTAAAGAAA TTACCGATTT AATCTCATCA
AATATTGACA AACAAATGCA GAGCGAGCAA GTTTCCGCAA TGATTTCGCA AAAAGTCGAT
GAACAGATGC AGACAGAAGA AATTAAGAAT ACCATTAAGA AAAATGCTGA GCTAAAAATG
GCAGAAAAGG ATATTCAGCA ACTGATTGAA CAAAATACAG AAGCACAGAT ACAAAAAGTC
ATATCCGAAA ACATGGCAAG TGAAGAAGTG CAATCAAAAC TTGCTGCAGC ATCGGAAGGG
GCAAAATCAG TTATTGCGCT CAAAACTTCC CTTGACGACT ACAATTCATT CTATCTTGGA
CTTATGAAGT ATACTGCAGG TGTCGCCCAG GCGGCAAGCG GTGCTTCTGA TTTGAAAAAC
GGAGCAAATG AACTGCAGAA CGGAACGGGT ACTTTATATA AGGGTGTTTG CTCCCTTTAT
GACGGAATAC TGACAATGAA AAACGGTCTG CCTGCACTCG TAGACGGTAT CACACAGCTT
AAAGACGGAG CAATGCAGCT TTCAGACGGG CTTTCAAGGT TCTATGAAGA AGGTATTCAG
AAATTAATCG ATACGGTCGA TGATGCCGAA AATCTTATCG AACGGCTGAA AGCTACCGTA
ACCGTATCAA AGAATTACAA GTCTTTTGCC GGAATAAGCG AAAACGCTGA CGGTAATGTC
AAGTTTATTT ACCGCACAGA CGAGATTAAA TAG
|
|---|
| Protein sequence | MKSKMIKIIS LCLCIAILAS GAAYALASGK DKAENVKTAE NITENTAEKQ HEEAAAKSDT
FKDETVYVLA NPDGTVQKII VSDWIKNTLS SEKITDVTEL ENTENIKGDE SYTLGGNNTR
VWDAQGNDIY YQGTIEKELP VDLSVSYKLD GKTVSADELI GKSGKVTIRF DYKNKQYETV
KINGKDEKIY VPFVMLTGVL LDNDNFTNVQ VSNGKIINDG NKTAVLGFAL PGLQENLAID
KEKFEIPSYV EITADTTDFS LGITVTVATN SLFNNIDVEK IDSISDLTDS MNELDDAMTK
LLDGSSSLYN GICTLLDKSK ELVEGINQLA EGAGKLKEGA YSLDEGAKKL YTGAAALSQG
LDTLSANNDT LNDGAKKVFE TILSTAETQL KASGLTVPEL TIENYASVLN EIIESLDSTK
VYNQALEQVT AAVEEKRDYI KSQVVEAVRS EVEANVTAAV TEQVKAEVTK AVKEQVSEKV
TANVRENVEE QVILAATGMN KASYYAAVSA GRVDAATQKA VKSAIDNKMA SKEITDLISS
NIDKQMQSEQ VSAMISQKVD EQMQTEEIKN TIKKNAELKM AEKDIQQLIE QNTEAQIQKV
ISENMASEEV QSKLAAASEG AKSVIALKTS LDDYNSFYLG LMKYTAGVAQ AASGASDLKN
GANELQNGTG TLYKGVCSLY DGILTMKNGL PALVDGITQL KDGAMQLSDG LSRFYEEGIQ
KLIDTVDDAE NLIERLKATV TVSKNYKSFA GISENADGNV KFIYRTDEIK
|
|---|
| |