Gene Cthe_1470 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_1470 
Symbol 
ID4810620 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand
Start bp1787110 
End bp1787727 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content34% 
IMG OID640106891 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001037892 
Protein GI125973982 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTATTAA TTAAATTGAG TTTTGTACTT TTTCTTTACA AGGGAGTTGA TAAATTGCTG 
GATGAGAGCA CTTTAATATC CAACACATTA AACGGTGACA TACAGTCGTT TGCTTTGCTT
GTACAAGCCT ATCAGGGACA ACTGTACAAC TTTATATATA AAATGACAAA ATCAAAAGAA
GACACGGAAG ACATCCTGCA AGATGTATTT GTAAAAGTAT ACAACAACTT GTACAAATAT
AATAATAATT ACCGCTTTTC CACGTGGATT TACAGCATTA CTCTCAATAC AATAAAATCA
TCATTGAAAA AAAAGAAACT CAGGCCTTCC GGCTGTAACA TAGATGATTT CATTGAAGAA
ATCCCAAGCT TTGACGACAG TCCGGAACTA CTGATAGAAG TCAAGGAACA TTACAAAGAA
ATAATTGAGA TTATCGATAG TCTGAAAGAA AAACAAAAAA CGGCTTTTAT ATTAAGATAC
ATAAGGGACT TTTCCTATAA AGAAATCGGA AAAATTATGG GTATCTCCCA GGAAGCCGCC
AAAATGAAAG TTCACAGGGC AAAATCCATA CTTGCCAAAA AGATCGCGGG CATGAGAAAG
GAAGGTGATT TCGAATGA
 
Protein sequence
MLLIKLSFVL FLYKGVDKLL DESTLISNTL NGDIQSFALL VQAYQGQLYN FIYKMTKSKE 
DTEDILQDVF VKVYNNLYKY NNNYRFSTWI YSITLNTIKS SLKKKKLRPS GCNIDDFIEE
IPSFDDSPEL LIEVKEHYKE IIEIIDSLKE KQKTAFILRY IRDFSYKEIG KIMGISQEAA
KMKVHRAKSI LAKKIAGMRK EGDFE