Gene Cthe_1366 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_1366 
Symbol 
ID4809361 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand- 
Start bp1659405 
End bp1659956 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content37% 
IMG OID640106790 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_001037791 
Protein GI125973881 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.000338855 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAATT TTACAGTCGT AAAAACGCCA ATTGAAGGAC TTGTAGTTGT AGAGCCAAAG 
GTTTTTACCG ATACCAGAGG GTTCTTTTTT GAGAGCTACA ATAAAAAGGC TTTTTGCGAA 
TTTGGTCTTA CGATGGAATT TGTTCAGGAT AACCATATAA AGTCAAGAAT AGGAGTGCTA 
AGGGGCATAC ATTTCCAAAG GAAATTTCCT CAGGGGAGAC TTGTCAGAGT AATTAAAGGG 
AAAGTCTATG ATGTGGCTGT AGATTTGAGA AAAAACAGTC CGACTTTTGG GAAATGGTAT 
GGAATAGAGC TTTCAGCAGA AAATAAAAAA ATGTTTTACA TACCGGAAAA CTTTGGTCAT 
GCATTTCTCA CCCTGGAAGA CGATACGGAA GTTCTATGCA AAACTACAAA TGTATATCGG 
CCTGAGTTTG AATCGGGAAT TATATACAAC GACCCTGAGT TAAATATAGA TTGGCCTCAA 
ATTGAAGGAG ATATTGTATT GTCAGAAAAA GATAAAAACC TGCCGACATT TAAAAATGCT 
GAGTTGGGTT GA
 
Protein sequence
MNNFTVVKTP IEGLVVVEPK VFTDTRGFFF ESYNKKAFCE FGLTMEFVQD NHIKSRIGVL 
RGIHFQRKFP QGRLVRVIKG KVYDVAVDLR KNSPTFGKWY GIELSAENKK MFYIPENFGH 
AFLTLEDDTE VLCKTTNVYR PEFESGIIYN DPELNIDWPQ IEGDIVLSEK DKNLPTFKNA 
ELG