Gene Cthe_1344 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_1344 
Symbol 
ID4809484 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand
Start bp1635311 
End bp1637485 
Gene Length2175 bp 
Protein Length724 aa 
Translation table11 
GC content42% 
IMG OID640106768 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_001037769 
Protein GI125973859 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000566061 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTGATG GTTATAGCAG ACTTATCAAA AAAATTAAAA AATACAACCC AAACTGCGAT 
TTCGCACTCA TTGAAAAGGC TCACAATCTT TCACTGGAGG CGCATAAAGG TCAGCAGAGG
GAATCCGGCG ATCCTTTTAT TGTCCATCCC ATGGAAGTTG CCAACATACT GGCAGATCTC
GAGCTGGATT GCACTGCAAT AGTTGCGGGT ATTCTTCATG ATATTGTCGA AGATACATCT
TACACTATTG AACAGATTAG GGAAAATTTC GGTGATGAAG TCGCAAATCT CGTGGACGGG
GTAACCAAGT TGGGCAAGAT TCCCTACACT ACCAAGGAGG AATTGCAGGC TGAAAACCTC
CGAAAAATGT TTCTTGCCAT GGCAAAGGAC ATCAGGGTTA TTCTCATAAA GCTGGCCGAC
CGTTTGCACA ACATGCGCAC TCTTAAGTAT ATGCCCCCGG AAAAACAAAT TGAGAAGGCA
AAAGAAACTC TTGAAATATA CGCCCCTTTG GCTCACAGGC TTGGTATATC GAAAATAAAA
TGGGAGCTTG AGGACCTTTG TCTAAGATAT CTTGATCCTA AAGGCTATTA CGACCTTGTG
AACAAAATAG CCAAAAAGAG AAGAGAAAGA GAAGCATATA TTTCCGAGAT TATAAAAACC
ATTCAGGAGA AAACCGTTGA GATAGGCATT GATGCCCATA TTGAGGGAAG ACCAAAGCAT
TTTTACAGTA TTTACAGAAA AATGGTGCAG CAAAATAAAA CTATAGAGCA GATATATGAC
CTTTTTGCGG TAAGAGTCAT TGTCACAACG GTAAAAGACT GCTATGCTGT TTTGGGCCTT
GTGCATGAAA TTTTCAAGCC CATGCCGGGA AGATTCAAAG ACTATATAGC AATGCCCAAA
CCCAATATGT ATCAATCTCT TCATACCACG TTGATTGGAC ATGAGGGAGT TCCTTTTGAA
GTGCAAATAA GGACATGGGA GATGCACAGA GTGGCCGAGG TAGGTATAGC AGCACACTGG
AAATATAAAG AAGGCAAGTC CGCGGATGAT TATGACAACA AACTGGCTTG GCTGAGGCAG
CTTCTGGAAT GGCAGAAGGA AATGCGGGAT GCCAGTGAGT TTATGGAAAC ATTGAAAATA
GACCTTTTTA CCGATGAGGT TTTTGTTTTT ACACCCAAGG GTGATGTCAT AAGTCTTCCC
GCCGGTTCAA CGCCTATAGA TTTTGCCTAT GCAATCCACA GTGCTATCGG AAACAAGATG
TCCGGAGCAA AAGTAAACAA TAAGATTGTA CCTATTGACT ATGTGCTCCA GAACGGAGAC
ATAGTGGAGA TACTTACATC TTCAAACGTA CAGGGGCCAA GCCGGGATTG GCTTAAAATT
GTAAAGAGTT CCCAGGCAAA GAATAAAATA AACCAGTGGT TTAAGAAAGA AAAAAGAGAA
GAAAATATTA TAAGAGGAAA GGAAATGATT GAAAAGGAGC TGAAAAAGCA GGGGTTTACC
GCAAGTCAGC TCTTTAAACC TGAGTGGGTG GATATAATAC TCAAAAAATA CACTTTTGCC
ACCATTGAAG ACCTCTGGGC GGCCATAGGT TATGGCGCAC TTACTGCAAA CAGGGTTATT
TCCAGGCTCA AAGAGGAATA CAGGAAAACT GTCAAGGCCG AAGAACTTGC GGAACAGATG
GCCAAACTGG ATGACAAAAA GGTAAGAATT CGTGCCAAAA AAGTACCGGA GAACGGTGTA
ATCGTTAAAG GAATAGAGAA TTGCCTGGTA AGGATTTCCA GATGCTGCAA TCCTGTTCCG
GGTGATGAGA TTATCGGTTA TATTACAAGA GGCAGGGGTG TTTCGGTACA TCGAAAGGAC
TGTATTAATA TCATGAATAA TATTGACGGC GACAACAGGC TTATCGAGGT AGCTTGGTAC
ACAGCAAACA ATGTGGCATA CAAGGCTGAT ATTACTATCA TGGCTCATGA CAGGACGGCG
CTTTTGATGG AGATAACCAA CGTTATTGGA GAGGCAAAGA TTCCGCTTAA GGCGATAAAT
GCAAGAACCA CCAAAGATCA GATTGCTATT ATGAACCTTA TTTTGGAGAT TACGAATACG
GAACAGCTTG AAAGTATCAT TAAAAAAATC AGAAAAGTTG ACGGAGTGTT TGAGGTATCA
AGAAACAGAC AGTAA
 
Protein sequence
MGDGYSRLIK KIKKYNPNCD FALIEKAHNL SLEAHKGQQR ESGDPFIVHP MEVANILADL 
ELDCTAIVAG ILHDIVEDTS YTIEQIRENF GDEVANLVDG VTKLGKIPYT TKEELQAENL
RKMFLAMAKD IRVILIKLAD RLHNMRTLKY MPPEKQIEKA KETLEIYAPL AHRLGISKIK
WELEDLCLRY LDPKGYYDLV NKIAKKRRER EAYISEIIKT IQEKTVEIGI DAHIEGRPKH
FYSIYRKMVQ QNKTIEQIYD LFAVRVIVTT VKDCYAVLGL VHEIFKPMPG RFKDYIAMPK
PNMYQSLHTT LIGHEGVPFE VQIRTWEMHR VAEVGIAAHW KYKEGKSADD YDNKLAWLRQ
LLEWQKEMRD ASEFMETLKI DLFTDEVFVF TPKGDVISLP AGSTPIDFAY AIHSAIGNKM
SGAKVNNKIV PIDYVLQNGD IVEILTSSNV QGPSRDWLKI VKSSQAKNKI NQWFKKEKRE
ENIIRGKEMI EKELKKQGFT ASQLFKPEWV DIILKKYTFA TIEDLWAAIG YGALTANRVI
SRLKEEYRKT VKAEELAEQM AKLDDKKVRI RAKKVPENGV IVKGIENCLV RISRCCNPVP
GDEIIGYITR GRGVSVHRKD CINIMNNIDG DNRLIEVAWY TANNVAYKAD ITIMAHDRTA
LLMEITNVIG EAKIPLKAIN ARTTKDQIAI MNLILEITNT EQLESIIKKI RKVDGVFEVS
RNRQ