Gene Cthe_1282 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_1282 
Symbol 
ID4809534 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand
Start bp1557289 
End bp1558941 
Gene Length1653 bp 
Protein Length550 aa 
Translation table11 
GC content39% 
IMG OID640106705 
Productdiguanylate cyclase with GAF sensor 
Protein accessionYP_001037707 
Protein GI125973797 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000101268 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCATTC GCTTTACGTG GATTTTCATC ATGGTCTTTG TTGCTCATAT TGTAGTCTGT 
GATATTGGCA TGCAATCCGG TCAAAACACA TATCCGGGTA CTGTGATCAA GCTTTCTTTC
TTTTTACTTA TACCTTTGGT CAATATTGCC AAGTATTTTC TTGTCAGAAA CAATTTGTTT
TTCCGCAAGA AAGTTTATCA CACCGTAAGA CTGGTGGAAG TGCCGCTTAT ATTGTCGGTC
ATAGTTTTTT CCGGGACCGG GGAATGGGGA TATGTTATGC TCATGTTCCT TATCCTTGTT
ACCAGTTTTT ATGCGGAAAA AAAGTTTTCC TTTGCAATGG TGGGATATGC TTTTTTGTGG
AATATTATTT TAAAGTATTT ATTTCCATTC CCTTTAGATA AAAATGGGTT TGCGGCTCTT
TTTGAATCGC CGAAGGATAT TATAGACATG TTTTCTATCT ATATTGGCTT TTTTCTGTTT
GCGGTTTTTT GCTGGATGCT GTACAAAGAC AATTATGAGA ACGAGCAGCA GAACAAGAAG
CTGTTCATGG AGATTGCAAA CAAATACGAG CAGCTTTCGG CCGCTCAGCA AGAAATTAAG
TCTCAAAATG ATAAATTAAA AGAGTGCAAT TCGAAGCTGG AAGAAGCGAA CAAAAAATTT
ATGACAAGCC TTGCGGAGCT TTTCACATTG CAGCAGATAA CCCAGGCCAT AAGCTCGATA
TTCGATGTCA GGGAGCTTTT AAAGAGCGTT AATGATATTA TAATCGGGGT TATGGGAGTA
AGCAGTTCCA CAATAATTCT TTATGATGAA AATAAAGGAA GACTCAAGGT ACATACCACA
AACATTACAA ACCGAAAAGA GCTTATTATA TTAAATGACA ATATTAACTG CCAAAAACTT
TTAGATGCAT TGCAAAAAGG AGAACCCATA CTTGAGAATT TTGTGGATAT GGAGGAATAT
CCTTTTGTCG AAGGAAGAGG CATACATTCT CTTCTGTGTG TACCTCTTAT CACAAAGGCA
AAGAAATTTG GTTTGGTACT TATTGAGCAC AAGTATTTCA ATGCTTTTGA TGACAACAAT
CTGAGACTTT TAAACATAAT AGGACAGCAA GTGGGAATTG CGATGGAGAA TGTGGAATTG
TACCAGAGGA TGCATGAAAT GGCTACCATA GACAGTCTAA CAGGAATATA CAACAGGCTT
TATTTCCAGG AAAGGCTCAG AGAGGAATTT GCGAACGCCA AAAAGGAAAA TTATGATTTG
TCGCTGGCTA TTATGGACAT CGACCACTTC AAACGTTTTA ACGATACCTT TGGCCATCTG
TTCGGTGACA AAGTTTTAAA ACATATTGCC CATCTTATGA AAAAATCCCT GCGAAGCGGA
GATATAATTG CAAGGTATGG AGGAGAAGAG TTTGTAATAT TGCTTCCGAG GACAAGCGTT
AAAGAAGCGT ATGACAAGGT CGAAAGGCTC AGGAATATTG TTGCAAAGAC GACGATAAAA
GATGAACTGG TGGAGGCCTC AGTTACTGTA AGCTTTGGAG TTTCATCCTA TCCTGAGTTT
GCAAACACTG AGTCAGAGCT TTTGAAAACA GCGGATAATG CGCTGTATGA CGCCAAAGAA
TCCGGCAGAA ACTGCGTTAG GATACCAAGA TAG
 
Protein sequence
MFIRFTWIFI MVFVAHIVVC DIGMQSGQNT YPGTVIKLSF FLLIPLVNIA KYFLVRNNLF 
FRKKVYHTVR LVEVPLILSV IVFSGTGEWG YVMLMFLILV TSFYAEKKFS FAMVGYAFLW
NIILKYLFPF PLDKNGFAAL FESPKDIIDM FSIYIGFFLF AVFCWMLYKD NYENEQQNKK
LFMEIANKYE QLSAAQQEIK SQNDKLKECN SKLEEANKKF MTSLAELFTL QQITQAISSI
FDVRELLKSV NDIIIGVMGV SSSTIILYDE NKGRLKVHTT NITNRKELII LNDNINCQKL
LDALQKGEPI LENFVDMEEY PFVEGRGIHS LLCVPLITKA KKFGLVLIEH KYFNAFDDNN
LRLLNIIGQQ VGIAMENVEL YQRMHEMATI DSLTGIYNRL YFQERLREEF ANAKKENYDL
SLAIMDIDHF KRFNDTFGHL FGDKVLKHIA HLMKKSLRSG DIIARYGGEE FVILLPRTSV
KEAYDKVERL RNIVAKTTIK DELVEASVTV SFGVSSYPEF ANTESELLKT ADNALYDAKE
SGRNCVRIPR