| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1282 |
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| Symbol | |
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| ID | 4809534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | - |
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| Start bp | 1557289 |
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| End bp | 1558941 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640106705 |
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| Product | diguanylate cyclase with GAF sensor |
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| Protein accession | YP_001037707 |
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| Protein GI | 125973797 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000101268 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCATTC GCTTTACGTG GATTTTCATC ATGGTCTTTG TTGCTCATAT TGTAGTCTGT
GATATTGGCA TGCAATCCGG TCAAAACACA TATCCGGGTA CTGTGATCAA GCTTTCTTTC
TTTTTACTTA TACCTTTGGT CAATATTGCC AAGTATTTTC TTGTCAGAAA CAATTTGTTT
TTCCGCAAGA AAGTTTATCA CACCGTAAGA CTGGTGGAAG TGCCGCTTAT ATTGTCGGTC
ATAGTTTTTT CCGGGACCGG GGAATGGGGA TATGTTATGC TCATGTTCCT TATCCTTGTT
ACCAGTTTTT ATGCGGAAAA AAAGTTTTCC TTTGCAATGG TGGGATATGC TTTTTTGTGG
AATATTATTT TAAAGTATTT ATTTCCATTC CCTTTAGATA AAAATGGGTT TGCGGCTCTT
TTTGAATCGC CGAAGGATAT TATAGACATG TTTTCTATCT ATATTGGCTT TTTTCTGTTT
GCGGTTTTTT GCTGGATGCT GTACAAAGAC AATTATGAGA ACGAGCAGCA GAACAAGAAG
CTGTTCATGG AGATTGCAAA CAAATACGAG CAGCTTTCGG CCGCTCAGCA AGAAATTAAG
TCTCAAAATG ATAAATTAAA AGAGTGCAAT TCGAAGCTGG AAGAAGCGAA CAAAAAATTT
ATGACAAGCC TTGCGGAGCT TTTCACATTG CAGCAGATAA CCCAGGCCAT AAGCTCGATA
TTCGATGTCA GGGAGCTTTT AAAGAGCGTT AATGATATTA TAATCGGGGT TATGGGAGTA
AGCAGTTCCA CAATAATTCT TTATGATGAA AATAAAGGAA GACTCAAGGT ACATACCACA
AACATTACAA ACCGAAAAGA GCTTATTATA TTAAATGACA ATATTAACTG CCAAAAACTT
TTAGATGCAT TGCAAAAAGG AGAACCCATA CTTGAGAATT TTGTGGATAT GGAGGAATAT
CCTTTTGTCG AAGGAAGAGG CATACATTCT CTTCTGTGTG TACCTCTTAT CACAAAGGCA
AAGAAATTTG GTTTGGTACT TATTGAGCAC AAGTATTTCA ATGCTTTTGA TGACAACAAT
CTGAGACTTT TAAACATAAT AGGACAGCAA GTGGGAATTG CGATGGAGAA TGTGGAATTG
TACCAGAGGA TGCATGAAAT GGCTACCATA GACAGTCTAA CAGGAATATA CAACAGGCTT
TATTTCCAGG AAAGGCTCAG AGAGGAATTT GCGAACGCCA AAAAGGAAAA TTATGATTTG
TCGCTGGCTA TTATGGACAT CGACCACTTC AAACGTTTTA ACGATACCTT TGGCCATCTG
TTCGGTGACA AAGTTTTAAA ACATATTGCC CATCTTATGA AAAAATCCCT GCGAAGCGGA
GATATAATTG CAAGGTATGG AGGAGAAGAG TTTGTAATAT TGCTTCCGAG GACAAGCGTT
AAAGAAGCGT ATGACAAGGT CGAAAGGCTC AGGAATATTG TTGCAAAGAC GACGATAAAA
GATGAACTGG TGGAGGCCTC AGTTACTGTA AGCTTTGGAG TTTCATCCTA TCCTGAGTTT
GCAAACACTG AGTCAGAGCT TTTGAAAACA GCGGATAATG CGCTGTATGA CGCCAAAGAA
TCCGGCAGAA ACTGCGTTAG GATACCAAGA TAG
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| Protein sequence | MFIRFTWIFI MVFVAHIVVC DIGMQSGQNT YPGTVIKLSF FLLIPLVNIA KYFLVRNNLF
FRKKVYHTVR LVEVPLILSV IVFSGTGEWG YVMLMFLILV TSFYAEKKFS FAMVGYAFLW
NIILKYLFPF PLDKNGFAAL FESPKDIIDM FSIYIGFFLF AVFCWMLYKD NYENEQQNKK
LFMEIANKYE QLSAAQQEIK SQNDKLKECN SKLEEANKKF MTSLAELFTL QQITQAISSI
FDVRELLKSV NDIIIGVMGV SSSTIILYDE NKGRLKVHTT NITNRKELII LNDNINCQKL
LDALQKGEPI LENFVDMEEY PFVEGRGIHS LLCVPLITKA KKFGLVLIEH KYFNAFDDNN
LRLLNIIGQQ VGIAMENVEL YQRMHEMATI DSLTGIYNRL YFQERLREEF ANAKKENYDL
SLAIMDIDHF KRFNDTFGHL FGDKVLKHIA HLMKKSLRSG DIIARYGGEE FVILLPRTSV
KEAYDKVERL RNIVAKTTIK DELVEASVTV SFGVSSYPEF ANTESELLKT ADNALYDAKE
SGRNCVRIPR
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