Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cthe_1271 |
Symbol | |
ID | 4809776 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium thermocellum ATCC 27405 |
Kingdom | Bacteria |
Replicon accession | NC_009012 |
Strand | + |
Start bp | 1545824 |
End bp | 1547863 |
Gene Length | 2040 bp |
Protein Length | 679 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640106694 |
Product | carbohydrate-binding family 6 protein |
Protein accession | YP_001037696 |
Protein GI | 125973786 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3507] Beta-xylosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAAAAA AACTGAAAAA AATAATTAAG TTATGCAGCA TGGTATTCGT TATCGGCATC TTAACATTAT TACTGCCTGA AAAAGGGGCT GCCGATTATC CGATTTTCTC ACAGCGTTTT ACTGCAGACC CAGCCGCAGT CGTGTACAAC GGAAGACTTT ATATTTATTG TTCCCATGAC TCGGATGCCA CACCCGGCCA GTCCACTTAC AACATCCCGG ATATAACCTG TATATCCACA GATGATTTGA AAAACTGGAC CGACCATGGA GAAGTGTTTA ATGCAAAAAG AGATTCCAGG TGGGCTTCGG TGTCCTGGGC ACCGTCAATT GTCTATCGCA ACAACAAGTT TTATTTGTAT TACGGTAACG GAGGAAACGG AATCGGAGTT GCTGTAAGCG ACAGTCCGAC AGGACCTTTC AAAGATCCTC TTCCGGGTCC GTTGGTAAGC TGGAATACCC CCGGAGTACA GCCTGCACAA AATATGTGGC TGTTTGACCC CGGTGTTTTT GTTGATGATG ACGGACAGGC TTATATGTAC TTTGGTGGAA ACGGACAAAA CAATATCAGA GTTATTAAGT TGGGCAATGA TATGATAAGC ACGGTAGGTT CAGCTATGAC GATGTCTGCT CCGAGATTTT TCGAGGCAGC ATATATGCAT AAGTATAATG GAAAATATTA TTTTTCCTAT GCCAGCGATT TCTCTCAAGG TGCATCTAAG ATTGAATATA TGATGAGCGA CAAGCCTACC ACAGGTTTTC AATATAAAGG GGTAATATTG CCGCAGCCAC CCGACAACTA TAGTAATAAT AACCATCATG CTATCGTTGA GTATAAAGGC AATTGGTATG TTGTGTATCA CAACAGGACT GTGGCAAAAC AGCGTGGACT GGACCCGGTA TATCAGAGAA ATGTTTGTAT TGATCAGATG TTTTATAACG CCGACGGTAC CATAAAGCAG GTTGTTCCAA CGGTAGATGG CTTGAAACAG CTCAAATATG TAGATCCTTA CACAAAAAAT TTAGCTGTAA CCATGCATAA GGAATCCGGT ATTGAGACTG AAGAATGCAG TGAAGGCGGA CGTAATGTGG CATTTATTGA AAACGGAGAT TGGATTCAAG TCAAAGGAGT TGATTTCGGA AATGTAGGCC CAACCAGTTT TGAAGCCAGA GTCGCCAGTG CTACAAACGG CGGAAACATT GAAATAAGAC TGGATAGTCC TACAGGAACT CTGATTGGCA CATGCAAAGT TGAAGGAACC GGAGACTGGC AGAAATGGGT AACCAAAACC TGTTCCGTCA GCAAGGTAAC CGGTGTTCAC GATTTGTTCT TCAGGTTTAC GGGGGGAAGC GGTTATCTGT TTAATTTCAG CTGGTGGAAA TTCAACTCAG ACGCAACCCC AACCCCAACC CCTCCCCCCC AACCTTCAAC TGTACCTGTA ACTGAAAGAA GTGCTTTTTC GAAAATAGAA GTGGAAGATT TCAATGACAT TAAGTCTTCC ACAATACAAA AAATCGGCAC TCCCAACGGC GGAAGCGGCA TAGGATATAT TGAAAACGGA GACTGGCTGG CGTATAAAAA TATTGACTTC GGAAACGGTG CGACCACCTT TAAGGCATTG GTTGCAAGTA CCCTTTCTCC AAATATTGAA CTTCGATTAG ACAGCCCGAC GGGAACACTT ATAGGAACAT TGAAAGTAGC AGCGACCGGC GGTTTTAACG CATACGAAGA ACAAAGCTGC AACATCAGCA AAGTTACAGG AAAACATGAC TTGTATCTTG TATTTTCCGG TGCCGTAAAT ATTGACTGGT TTACTTTTGG CGGCAGTAGT GGCATAATTA AACGAGGCGA TACAAACAGC GACGGAAAAA TCAACTCGAC AGACGTCACA GCACTCAAGA GACATTTGCT CAGAGTAACC CAGCTTACAG GCGATAATCT TGCCAACGCA GATGTCAACG GGGACGGAAA TGTTAACTCT ACAGATCTTC TTCTGCTTAA ACGATATATA TTAGGGGAAA TAGAAAATTT CCCGATATAA
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Protein sequence | MPKKLKKIIK LCSMVFVIGI LTLLLPEKGA ADYPIFSQRF TADPAAVVYN GRLYIYCSHD SDATPGQSTY NIPDITCIST DDLKNWTDHG EVFNAKRDSR WASVSWAPSI VYRNNKFYLY YGNGGNGIGV AVSDSPTGPF KDPLPGPLVS WNTPGVQPAQ NMWLFDPGVF VDDDGQAYMY FGGNGQNNIR VIKLGNDMIS TVGSAMTMSA PRFFEAAYMH KYNGKYYFSY ASDFSQGASK IEYMMSDKPT TGFQYKGVIL PQPPDNYSNN NHHAIVEYKG NWYVVYHNRT VAKQRGLDPV YQRNVCIDQM FYNADGTIKQ VVPTVDGLKQ LKYVDPYTKN LAVTMHKESG IETEECSEGG RNVAFIENGD WIQVKGVDFG NVGPTSFEAR VASATNGGNI EIRLDSPTGT LIGTCKVEGT GDWQKWVTKT CSVSKVTGVH DLFFRFTGGS GYLFNFSWWK FNSDATPTPT PPPQPSTVPV TERSAFSKIE VEDFNDIKSS TIQKIGTPNG GSGIGYIENG DWLAYKNIDF GNGATTFKAL VASTLSPNIE LRLDSPTGTL IGTLKVAATG GFNAYEEQSC NISKVTGKHD LYLVFSGAVN IDWFTFGGSS GIIKRGDTNS DGKINSTDVT ALKRHLLRVT QLTGDNLANA DVNGDGNVNS TDLLLLKRYI LGEIENFPI
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