Gene Cthe_1242 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_1242 
Symbol 
ID4809747 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand- 
Start bp1505309 
End bp1506421 
Gene Length1113 bp 
Protein Length370 aa 
Translation table11 
GC content34% 
IMG OID640106665 
Productintegrase catalytic subunit 
Protein accessionYP_001037667 
Protein GI125973757 
COG category[L] Replication, recombination and repair 
COG ID[COG2826] Transposase and inactivated derivatives, IS30 family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTAATCC ATTGTAAAAT GTTTAATAAC CAAAGAAAAA CATTAGCAAA GGAGTACCAT 
GAGTTATATA TGAATAATAA CACAGAAACA AGAAAAAACA AACACCTAAA TGAAAGAGAA 
AGATACGCCA TAGAGTTGTA CCTAAAAGAA AAGTATACAG TAACGGAAAT AGCAAAGAGG 
TTGGGCAGGC ACAGAAGGAC AATAGAAAGA GAAATAACCC GTGGGACAAT ATATTTACAA 
AATAGTGATT TAACATACAG AAAAGAGTAT TGTGCAGATG TAGCCCAAAG GAGATATGTA 
GAGAACGGGA AGAATAAAGG TCCACGGTTA AAGATAGGAA ATGACCATGA ATTAGTGAGG 
TATATAGAAT CAAAGATAAT AAATGAAAAA TATTCTCCTG ATGCTGTTAT TGGACAAATA 
AAAGCAAAGG GACTGAAGTT TAAAACGAGT ATCTGCACGA AAACACTATA TAACTACATT 
GATAGAGGGG ATGTATTTTT AAGACTAACG AATAAATATT TGCCAGTGAA AAAGGATGGT 
AAAAAACGCA TATATCAAAG GGTAAAGAAG ATAGCACTGA AAAATCTTAA GGGAAGCAGC 
ATAGAGGAAA GGCCGAAAGA AGTTAACGAT AGGAAGGAAT ATGGACACTG GGAGATGGAC 
TGTGTAGTAG GCAGAAAAAA TAGCGCAGCA GTATTACTGG TATTAAGTGA ACGAAAGACA 
AGAGAAGAAA TAATTCTTAA ACTACCAGAC AAAACGCAGG AATCAGTAAT CAAAGCAATA 
GATGAATTAG AAAGGAAGTA TAGAAGGAAA TTTAGGGAGA AGTTTAAAAC GATAACAGTA 
GATAACGGGA CAGAGTTTTT GGACTATAGA GGGATAGAGA AATCAAAAAC AGAGCCAGGC 
AAGGACAGGA CGAAAGTGTA TTATGCTCAT CCTTATAGTT CTTGGGAAAG AGGAACGAAC 
GAAAATATTA ATAAACTGAT AAGAAGATTT ATACCAAAAG GAACAGATAT ATCAAAAGTA 
AGTAAAGCAA AAATAAAAAG TATAGAGAGA TGGATTAATG AATATCCAAG AAGAATGTTT 
GGTTATAGGT CAGCCATAGA AATGGCGGTA TGA
 
Protein sequence
MVIHCKMFNN QRKTLAKEYH ELYMNNNTET RKNKHLNERE RYAIELYLKE KYTVTEIAKR 
LGRHRRTIER EITRGTIYLQ NSDLTYRKEY CADVAQRRYV ENGKNKGPRL KIGNDHELVR 
YIESKIINEK YSPDAVIGQI KAKGLKFKTS ICTKTLYNYI DRGDVFLRLT NKYLPVKKDG 
KKRIYQRVKK IALKNLKGSS IEERPKEVND RKEYGHWEMD CVVGRKNSAA VLLVLSERKT 
REEIILKLPD KTQESVIKAI DELERKYRRK FREKFKTITV DNGTEFLDYR GIEKSKTEPG 
KDRTKVYYAH PYSSWERGTN ENINKLIRRF IPKGTDISKV SKAKIKSIER WINEYPRRMF 
GYRSAIEMAV