Gene Cthe_1228 details

Gene Information

• Locus tag: Cthe_1228
• Symbol: thrS
• ID: 4809920
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: -
• Start bp: 1468610
• End bp: 1470517
• Gene Length: 1908 bp
• Protein Length: 635 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 640106651
• Product: threonyl-tRNA synthetase
• Protein accession: YP_001037653
• Protein GI: 125973743
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0441] Threonyl-tRNA synthetase
• TIGRFAM ID: [TIGR00418] threonyl-tRNA synthetase

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000338672
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTAAAA TAACACTTAA GGATGGAAGT GTTAGAGAAT ACAATGAAGG GATTACAATC 
AAAGAAGTGG CGGAAAGTAT AAGTGCGGGG CTTGCGAGGG TTGCCCTTGC AGGCGAGGTG 
AACGGTGAGG TAAAAGATTT GAGTTACCCG CTTGAAAATG ATTGCACTCT TAACTTGTTG 
ACTTTTGATG ATGAAGGCGG AAGAGACGCC TACAGGCATA CCACATCCCA TATACTGGCA 
CAGGCCGTCA AGAGGCTGTA TCCCGATGCA AAGCTGGCAA TAGGGCCTGC AATAGAGAAC 
GGTTTTTATT ATGACTTTGA TGTGGAAAAG CCTTTTTCGG TGGAAGATCT GGAAAAGATC 
GAAGAGGAAA TGAAGAAAAT CATAAAAGAG GACTACAAGC TTGAAAGATT TACTCTTCCA 
AGGGAAGAAG CCATAAAATT TATGGAAGAA AGAAACGAAC CGTACAAAGT GGAATTGATT 
CGGGATTTGC CGGAAGGTGA AACAATATCT TTTTACAAAC AGGGTGATTT TGTTGATTTG 
TGTGCCGGAC CACACATAGA ATCCACAGGA AAGGTAAAGG CTTTTAAGCT GATGTCGGTT 
GCCGGAGCAT ACTGGAGAGG CAACGAAAAG AATAAGATGC TCCAGAGAAT TTACGGTACT 
TCCTTTACCA AGAAGAGTGA CCTGGATGCG TATATTACAA GAATTGAGGA AGCAAAGAAG 
AGAGATCACA GAAAGCTTGG AAGGGAGCTG GATCTCTTTG ATATTTATGA AGAAGGTCCC 
GGTTTTCCGT TCTTTATGCC AAAGGGAATG GTTTTAAGAA ACGTTTTGGA GGAGTATTGG 
AGAGAAGAAC ACAGAAAAGC CGGATATCAG GAAATAAAGA CTCCGATAAT TTTGAACGAA 
GAACTGTGGC ACCGCTCCGG GCACTGGGAT CATTACAAGG AGAATATGTA TTTTACGAAA 
ATAGATGAGG CCGACTTTGC CATCAAGCCG ATGAACTGTC CCGGAGGCAT GCTGGTATAC 
AAGAGAAAGC TTCATTCCTA CAGGGATTTG CCTCAGAGGC TGGCGGAGCT TGGTCTGGTG 
CACAGGCACG AGCTTTCCGG AGTTTTGCAC GGCTTAATGA GGGTTAGATG CTTTACCCAG 
GACGATGCCC ACATATTTAT GACTCCGGAT CAAATTGAAA GCGAAATTCT TGGTGTTATA 
AGTCTGATTG ATGACTTCTA TAAAGTTTTC GGTTTCAAAT ATCATGTGGA ACTGTCCACG 
AGACCGGAAA ATTCCATGGG TTCGGATGAA GACTGGGAAA GGGCTACAAA TGCACTGAAG 
AACGCTCTTG AAAAGAAAGG AATAGATTAT AAGATAAATG AAGGAGACGG AGCATTCTAC 
GGACCTAAGA TAGATTTCCA CCTTGAAGAC TCCATTGGAC GTACCTGGCA GTGCGGAACA 
ATACAGCTCG ATTTCCAGAT GCCGGAGAGA TTTGACTTGA CGTATATAGG TCCTGACGGA 
GAAAAGCACA GACCTGTTAT GATTCATAGG GTTGTGTTCG GCAGCATAGA AAGGTTCATC 
GCCATTTTGA CCGAGCATTA TGCGGGAGCT TTCCCTGTAT GGCTTTCACC GGTGCAGGTA 
AAGATACTGC CCATACTTGA AAAACAGCAT GACTATGTTG CTGAAGTTAA AAAAGCGCTG 
GAAGAGAAAG GCGTCAGAGT GGAAGCTGAT TTGAGGAATG AAAAGATTGG CTACAAAATC 
AGGGAGGCGC AACTTGAAAA AGTGCCTTAC ATGCTTGTAA TTGGTGACAA AGAGATGGAG 
AACAGAACTG TTGCGGTAAG ATCAAGAAAA GACGGAGATT TGGGGCCCAT GCGTCTTGAA 
GATTTTGTAA ACAGAATTGT TGAAGCAATC AAGAATAAAG AAAATTAA 

 

Protein sequence

MIKITLKDGS VREYNEGITI KEVAESISAG LARVALAGEV NGEVKDLSYP LENDCTLNLL 
TFDDEGGRDA YRHTTSHILA QAVKRLYPDA KLAIGPAIEN GFYYDFDVEK PFSVEDLEKI 
EEEMKKIIKE DYKLERFTLP REEAIKFMEE RNEPYKVELI RDLPEGETIS FYKQGDFVDL 
CAGPHIESTG KVKAFKLMSV AGAYWRGNEK NKMLQRIYGT SFTKKSDLDA YITRIEEAKK 
RDHRKLGREL DLFDIYEEGP GFPFFMPKGM VLRNVLEEYW REEHRKAGYQ EIKTPIILNE 
ELWHRSGHWD HYKENMYFTK IDEADFAIKP MNCPGGMLVY KRKLHSYRDL PQRLAELGLV 
HRHELSGVLH GLMRVRCFTQ DDAHIFMTPD QIESEILGVI SLIDDFYKVF GFKYHVELST 
RPENSMGSDE DWERATNALK NALEKKGIDY KINEGDGAFY GPKIDFHLED SIGRTWQCGT 
IQLDFQMPER FDLTYIGPDG EKHRPVMIHR VVFGSIERFI AILTEHYAGA FPVWLSPVQV 
KILPILEKQH DYVAEVKKAL EEKGVRVEAD LRNEKIGYKI REAQLEKVPY MLVIGDKEME 
NRTVAVRSRK DGDLGPMRLE DFVNRIVEAI KNKEN