| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1217 |
|---|
| Symbol | |
|---|
| ID | 4809909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 1450289 |
|---|
| End bp | 1452619 |
|---|
| Gene Length | 2331 bp |
|---|
| Protein Length | 776 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640106640 |
|---|
| Product | ATP-dependent Clp protease ATP-binding subunit ClpA |
|---|
| Protein accession | YP_001037642 |
|---|
| Protein GI | 125973732 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGAT TGGATGACGT AGCTAACAAA ATCTTAATTG CAGCATATAA CGAAGCAAAA
CATCAAAAAC ATGAATTTTT CACACCGGAG CATATTCTTT ATGCTTCCCT GTTTTTTGAT
GAAGGCAGGG ACATAATAGA AAACTGCGGC GGCAAAGTTG AAGATATTAA AAAGGATTTG
CTGGAATTTT TCCGCAACAA TATGCCCATT GTTGAAAACC ACGAGCCCAT AGAATCCCTG
GGGATCAACA GTGTCATGCA GGCCACTGCG TATCAGTGCA TTGCCGCAGG CAGAGAATAT
ATACGCATAG GCGATATTAT AGTGGCCCTC TACGGTGAAA AAGAATCTTT TGCCAGTTAT
ATACTTCAAA AAAACGGAAT AAAAAAACTT GACGTTTTAA AATATATTTC CCACGGAGTA
TCCCTGGTCC CAAAAAATAT GGAAACATCT TTAAAATCTT TGGAGACCGA CACTTATCTT
GAAGCTTACC AGTATGCCGA TGATTGGGAA TACGATTATG AATATGAAGA TATTGATGAA
GATGAAGACA TTGATGAAGA AAGCTCCTCA AAAAGCAACT TTTTGGAGCA CTTTACAATT
GACCTTACCG AAAAAGCAAG AAAGGGTAAA ATAGACCCTC TTATCGGCAG AGAGGATATT
TTGGAACGAA CAATACAGGT TTTGTCCAGA AGGCTTAAGA ACAACCCCAT TCACGTTGGG
GATCCCGGAG TGGGAAAAAC TGCAATTACC GAAGGTCTGG CAAGGCTGAT TGTGGAGGAC
AAGGTTCCAA AAAGTTTAAA AGGCAGTAAA ATATACTATC TTGACATGGG AAGCATGCTG
GCAGGCACCA AATACCGCGG AGACTTTGAA GAACGTATTA AAAAGGTTCT CAATGAAATC
CAAAACCAGC CGAAAGCAAT TGTTTATATA GATGAAATTC ATACAATAGT GGGTGCCGGG
GCCGTATCCG ACGGTGCGAT GGATGCGTCA AACATCATAA AGCCTTTTCT TACACAGGGC
ACATTGAGGT TTATAGGCTC GACAACTTAT GAAGAGTATA AAAAGTACTT TGAAAAGGAC
AGGGCTCTGT CGAGGAGATT TCAAAAAATT GATGTTCCGG AACCGTCAAT TGATGACACG
TTCAAGATAC TCAAAGGTCT TAAGGACAGA TATGAAGAAT ATCACAAGGT AAAATACACA
GACAGTGCCT TAAGACTTGC CGCGGAGCTT TCTGCAAAAT ACATCCAGGA TCGTCATCTT
CCTGACAAAG CAATAGACGT AATTGACGAA ACCGGAGCTT ATGTGCGTCT TCATGCAAAA
GATGAAGACA AGGTAATTAC CATAAAAAAC AAGGACATAG AGCGCACGGT GTCTGCAATT
GCCAGAATAC CGATACAGAG TGTATCCAGG GATGAAATTT CAAAACTTAA AAACCTTGAT
GTAAAATTAA AATCCACAAT ATTCGGCCAG GACAAGGCTA TTGACACTGT GGTGCAAGCT
ATAAAAAGGT CCAGGGCGGG ATTCAATGAA AATGAAAAAC CCGTTGCCTC CCTTCTTTTT
GTCGGTCCGA CAGGTGTCGG TAAAACTGAG CTTGCAAAAC AGTTGTCCCT TCACCTCGGT
ATTCCTTTTA TAAGGTTTGA TATGAGTGAG TATCAGGAAA AGCACACTGT TTCAAGGTTG
ATAGGTGCTC CACCCGGATA CGTTGGATAT GAAGAAGGCG GACTTTTGAC GGATGCAATA
AGAAAAACTC CGCATTGTGT GCTGCTTCTC GACGAAATCG AGAAAGCGCA CCCCGATATT
TACAATGTGC TGCTTCAGGT AATGGATTAT GCGGTACTTA CGGACAACAA CGGAAAAAAA
GCGGACTTTA GAAATGTAAT ACTGATAATG ACCTCCAACG CCGGTGCCCG GGAAGTCGGA
AGAACGCTTA TAGGATTTGA CAGCAGAAAC GTTGACAGAA GCGCCATGAC AAAAGAAGTT
GAAAGAATAT TCTCTCCGGA GTTTCGAAAC AGACTTGATG ATATTGTGGT ATTCAACCAT
ATCAATGAAG AGATGGCGCT GCTTATAACC AAAAAAGCCA TAAATCAATT CAAGGAAAAA
CTAAAAACGA AAAATATCAA GCTTAAAGTG ACGGAAAGAT GCTGCAAATG GATTGCCCAA
AAAGGTCTTT CGTCAATTTA CGGTGCCCGT GAAATATTGA GGTATGTTCA GGACAAAATA
AAAACGTATT TTGTTGACGA AGTTCTCTTT GGAGAGCTTT CCAAAGGCGG CACTGCAATA
ATAGACGTTG TGGACGGAGA AATTAAAATA AGCAAAAAAA CTCAAAGGTG A
|
|---|
| Protein sequence | MMRLDDVANK ILIAAYNEAK HQKHEFFTPE HILYASLFFD EGRDIIENCG GKVEDIKKDL
LEFFRNNMPI VENHEPIESL GINSVMQATA YQCIAAGREY IRIGDIIVAL YGEKESFASY
ILQKNGIKKL DVLKYISHGV SLVPKNMETS LKSLETDTYL EAYQYADDWE YDYEYEDIDE
DEDIDEESSS KSNFLEHFTI DLTEKARKGK IDPLIGREDI LERTIQVLSR RLKNNPIHVG
DPGVGKTAIT EGLARLIVED KVPKSLKGSK IYYLDMGSML AGTKYRGDFE ERIKKVLNEI
QNQPKAIVYI DEIHTIVGAG AVSDGAMDAS NIIKPFLTQG TLRFIGSTTY EEYKKYFEKD
RALSRRFQKI DVPEPSIDDT FKILKGLKDR YEEYHKVKYT DSALRLAAEL SAKYIQDRHL
PDKAIDVIDE TGAYVRLHAK DEDKVITIKN KDIERTVSAI ARIPIQSVSR DEISKLKNLD
VKLKSTIFGQ DKAIDTVVQA IKRSRAGFNE NEKPVASLLF VGPTGVGKTE LAKQLSLHLG
IPFIRFDMSE YQEKHTVSRL IGAPPGYVGY EEGGLLTDAI RKTPHCVLLL DEIEKAHPDI
YNVLLQVMDY AVLTDNNGKK ADFRNVILIM TSNAGAREVG RTLIGFDSRN VDRSAMTKEV
ERIFSPEFRN RLDDIVVFNH INEEMALLIT KKAINQFKEK LKTKNIKLKV TERCCKWIAQ
KGLSSIYGAR EILRYVQDKI KTYFVDEVLF GELSKGGTAI IDVVDGEIKI SKKTQR
|
|---|
| |