| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1202 |
|---|
| Symbol | |
|---|
| ID | 4809894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 1432762 |
|---|
| End bp | 1433937 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640106625 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001037627 |
|---|
| Protein GI | 125973717 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00882] oligosaccharide:H+ symporter
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.207324 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTGG ATAATCTTAA ACGTTCAGAA AGATACCCGT TCTCTTTTAT TCTGTTTTAT
TCCTTGTTTT ATATGGGCCT TGCGGTATTT GGCGTGTTTA TGCCTGTGTA TTTGGAAGGG
CTGGGCTATG ACAATACGGA TATAGGAACA TTTCTTTCAA TCAGTTCGTT TGTCGGCCTG
TTTGCACAGC CCATTTGGGG TGTCATAAGT GACCGGGCAA AATCCAAAAA CAATGTGCTG
AAAATGTTGG TGCTTTTCAG CAGCATTGCC ATTTTTATGT TTCATCTCTC GGGCAACTAT
TACTATATAT TTGCGGTAAT GGTTGTTTAT GCCTTTTTCC AAACGCCCAT TACTCCGATA
GGTGATGCGA TTACATTGGA GTATATTACT GACACAAAAT GGAAGTATGG CCCGATAAGG
CTTGCCGGTG CATTGGGATA TGCGGTGATG GCATTTATCG GAGGGGCATT GACAAGAAAA
AATATCAACG CTATTTTCTT TATATGCTTT GTCATAGGTA TTATGTCTTT GATTACAGTA
TTTAGAATGC CAACGGTAAA AGGACATCAA TCGGACGGAA ACAAGCTTTC CATTTTAGAA
GTTTTCAAAA ACAGCGAACT TGTGCTGCTT ATGGGATTTA CACTTGTTAT TCATACTACC
ATGGGTTTTT ATAATACTTT CTTTCCGATT TACTATAAAA ACATGGGTGC TGACAACACC
ATTCTGGGAT TGGCGGTGTT TATCGGCTCG GCGAGTGAAA TAATCTTCCT TGTTTTCGGC
GACAGGATAA TAAAACGTTT GGGAATCAAG TTTACGCTGT TCGGTGCAGC GGTTGTTGCA
GTTGTACGGT GGGCAAGTTT GGGATTGATT AACAATATTT TTGCAGTGCT TGCACTCCAA
ATTCTCCATG GTTTTATATT CATTGTTTTG GCCTACTCCA TGGCAACATA TATCAATAAT
GAGATGCCAC CTGAATTGAA GGCCTCAGGA CAGACGGTAA ACTCCGTCAT AGGTTTGGGT
ATTTCCAGGA TAATTGGAAG TACAGGCGGC GGTGTGATAA GTGATTTAAT CGGAATCAGG
CAGGTATTCT TTTTAAATTC GGTTATTGTT CTTGCTTCAA TTGTCATTTT TGGCGCAATA
TTTTTGGTAA GAAGACAAAA AATTACAGGA CAATAG
|
|---|
| Protein sequence | MILDNLKRSE RYPFSFILFY SLFYMGLAVF GVFMPVYLEG LGYDNTDIGT FLSISSFVGL
FAQPIWGVIS DRAKSKNNVL KMLVLFSSIA IFMFHLSGNY YYIFAVMVVY AFFQTPITPI
GDAITLEYIT DTKWKYGPIR LAGALGYAVM AFIGGALTRK NINAIFFICF VIGIMSLITV
FRMPTVKGHQ SDGNKLSILE VFKNSELVLL MGFTLVIHTT MGFYNTFFPI YYKNMGADNT
ILGLAVFIGS ASEIIFLVFG DRIIKRLGIK FTLFGAAVVA VVRWASLGLI NNIFAVLALQ
ILHGFIFIVL AYSMATYINN EMPPELKASG QTVNSVIGLG ISRIIGSTGG GVISDLIGIR
QVFFLNSVIV LASIVIFGAI FLVRRQKITG Q
|
|---|
| |