| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1197 |
|---|
| Symbol | |
|---|
| ID | 4810149 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 1426715 |
|---|
| End bp | 1428130 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640106619 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001037622 |
|---|
| Protein GI | 125973712 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01445] intein N-terminal splicing region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000101518 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGCCG CAGTAGTTAT CACAGGATTG GGAATAGCAG CGGCGCTGAC AGGAGGAGTA
TTGGGAGTTA TACTGGCAGG AGCGTTCTGG GGAGCATTGG CCGGAGGCTT GATAGGAGGA
GCAGTCGGAG GAATAGCAGC GGCGATAAAT GGAGGTTCGT TCCTAGAAGG ATTTGCGGAT
GGCGCTTTAA GCGGAGCGGT TTCCGGAGCG GTGACAGGAG CGGCATGTGC CGGGCTTGGT
GCTTTGGGAG CAGCGGCAGG GAAAGGCATC CAATGCATGA GCACTGTAGG AAAAGCAATA
AATGTTACTT CGAAAGTAAC TGCAGCCCTT TCGTTGGGTA TGGACGGATT TGACATGCTG
GCAATGGGAG TATCGCTGTT TGATCCATCC AACGCATTGG TTGAATTTAA CCAGAAGCTG
CATTCCAATG CACTTTACAA TGGATTCCAG ATTGCAGTAA ACGCGCTGGC TGTTTTCAGT
GCCGGGGCGG CATCTACAAT GAAGTGCTTT GTTGCGGGTA CGATGGTATT GACAGCGGCA
GGCTTGGTTG CGATAGAGAA TATCAAGGTA GGAGATAAGG TAATTGCGGC GAATCCGGAG
ACTTTTGAAG TAGCCGAGAA GACAGTGCTT GAGACATATG TGAGAGAGAC AACGGAGCTT
TTGCATTTGA GAATTGGAGG CGAAGTAATC AAAACAACCG TTGACCATCC ATTTTATGTA
AAAGATGTTG GCTTTGTTGA AGCGGTGAAT CTGCAAGTCG GAGACAAGTT GGTTGATTCA
AAAGGCAATG TTTTGGTGGT AGAAGAGAAA AAGCTCAAAA TAACTGGTAA ACCTGTGAAA
GTTTACAACT TTAAAGTTGA TGACTTTCAT ACTTATCATG TTGGGAATAA AGGGATATTG
GTACATAATG CGAATTATAA TCCTAAAACT ACCTTTGAAA ATCTGGATTT GGAAACCGCC
AGTAACAAGC AAAAGGGTAA TTATGGAGAA TATCGAGCGG ATGATAATCT TATAAATAAT
CCAAAATTGA AGGAAGTAGG ATATGATTTG GAACAGATAG GAGGGAAAGT TCCGACATCA
CCGGATGATA AAATCACAAA AGGGATAGAT GGTATATATG TAAACAAGAA TCCTAATTCA
AATATTAAAT ATGTGATTGA TGAGTCAAAG TTTAATACTG CACAATTGGG GAAAACGAAA
AAAGGCATAA AGCAAATGTC GGATGAGTGG CTCCGTGAGA AACAAGGTAA AAGAATTTTA
CAAGCAGTTA ATGGTGATAG AAGACTGAAA GATGATATAA TAGAAGCATT AAACAACGGT
GCAGTAGAAA AAGTTTTATC ACGAGTTGGC AAGGATGGAA AAGTAACGAC GTATAGGTTA
AACAGCAATG GTGAAATAAT TGGATTCTGG CCATAA
|
|---|
| Protein sequence | MAAAVVITGL GIAAALTGGV LGVILAGAFW GALAGGLIGG AVGGIAAAIN GGSFLEGFAD
GALSGAVSGA VTGAACAGLG ALGAAAGKGI QCMSTVGKAI NVTSKVTAAL SLGMDGFDML
AMGVSLFDPS NALVEFNQKL HSNALYNGFQ IAVNALAVFS AGAASTMKCF VAGTMVLTAA
GLVAIENIKV GDKVIAANPE TFEVAEKTVL ETYVRETTEL LHLRIGGEVI KTTVDHPFYV
KDVGFVEAVN LQVGDKLVDS KGNVLVVEEK KLKITGKPVK VYNFKVDDFH TYHVGNKGIL
VHNANYNPKT TFENLDLETA SNKQKGNYGE YRADDNLINN PKLKEVGYDL EQIGGKVPTS
PDDKITKGID GIYVNKNPNS NIKYVIDESK FNTAQLGKTK KGIKQMSDEW LREKQGKRIL
QAVNGDRRLK DDIIEALNNG AVEKVLSRVG KDGKVTTYRL NSNGEIIGFW P
|
|---|
| |