| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1107 |
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| Symbol | |
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| ID | 4811405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | - |
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| Start bp | 1316762 |
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| End bp | 1319125 |
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| Gene Length | 2364 bp |
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| Protein Length | 787 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640106529 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001037532 |
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| Protein GI | 125973622 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E
[TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTAGGGG TAGATACAAG AGGTATTGAT GAAATACTTT TGGAAATGGG AGTTTTAAAA
ATAGTTGACC TTAAAAAAGC CTGGGATATT CAGAGGGAAA GCAATAAGAA CATTGAGGAC
GTGCTATTGG AACTCGGTCT TGTATCCCAG AAAGACATAA TGCATGCCAA TGCCGTGAAG
ATGGGTATTC CTTTCGTCGA TCTGTCAACT TATCAAATCA GCGATTCCAG TGTTCCTTTA
TTAATTACAC GAAACATAGC AAACCGGTAC AAGGTTATAC CCATAGAAAA GGAAAATGGT
GTTTTGACAG TTGCAATGAG TGATCCGACG GATATTTTCT GTATAGATGA CATACGTCTT
GCAACTGCTT TGGAAATAAA GCCTGTCCTT GCGGATGTCA AGGAGATAGA AAGACTTATT
GTTGAATATT TCGGAGAAGA AAAGAAGCCG CAGGAATCGA AATTAAAAGC GGAAAATGAG
GAGCAGAACA AGAAAGAAGA ACTTTTAAAA ATGGAGGAAG AACTTCTTGG AAGAGAGATA
TATAATAACA TAAAAGCCGA TGTTGAGACG AGAGAGCCGG AATTTGATTT GGCAAGCAAG
GGATTTGATC AGAATACTTA CAACGAAAGC GGTATTTTTA AAGATAAAAT AGGAAACATC
CTTGTACGTG CGGGAGTTAT TACACAGGAT CAACTGGAAA ATGCCCTCAG TATACAGAAA
AAATCTGGCG GACTTATCGG TCAGATTTTA GTAAAGCAAG GCTATATTGA CAGAAGGTCT
CTTTATGAAT TTCTCCAAAA ACAGATGGGA GTCGAATACG TTGATATTGA GGGAATTGAA
ATTGATGAGG ATATCATTGG TTTGGTATCC CCGAATTTGG CAAAAACCCA CAAGGTAATC
CCTATTGAAA AAGTGGACGG GAATTTAAAG GTTGCGATGA GCGACCCGAT GAACATATTT
TCAATTGACG ATTTGAGGCT TACAACCGGC CTTGAAATTA TTCCTTGCCT TGCCGATGAA
GAGCAGATTT CGGCACAGTT GGAAAAATAC TACGGAAAAG CTTCCAGGAA GACCAGTGCG
AAAGAAATAG AGCAGAAGGT TGCGGATCTT GACGAGGAAA TTAAGAAAGT AAATGAAAAA
ATTGCGGTTG AAATAACTCA AACTGAAGAT GAAGATACAA CAATTGACAT TAGCGATCTT
GAAAATGCCC CCATTGTCAA GATGGTTAAT ATTATCTTCC AGAAAGCCGT GGCTACAAGA
GCAAGTGATA TTCACATAGA ACCCCAGGAA GATTGTGTTT TAATAAGATT CAGAATAGAC
GGACAACTGG TAGAGATAAT GAGATATGAC AGAAAGATTC TTTCTTCAAT TGTTGCCAGA
ATAAAAATCA TCAGCGGTCT GAATATTGCG GAAAAGAGAA TTCCTCAGGA CGGAAGAATA
GGAATAAAAA TTGACGACAG GGAGTATGAC ATGCGTGTTT CCGTTCTGCC TACAATGTTC
GGAGAAAAAG TTGTTATAAG AATTGCCGAC AAGGAAGGCT TTAATGTTTC GAAGAAAGAG
TTGGGATTCT TTGAAGATGA TTTGGAGAAA TTTGACCAGA TAATATCAAG TCCTTACGGT
ATTATACTGG TTACCGGACC TACCGGAAGC GGTAAGTCAA CAACGCTTTA TACCGCGCTG
AGGGAATTGT GCAAGCCTAA TGTCAACATA CTTACTGTTG AGGATCCTGT TGAAAGTACT
ATAAAGGGTA TAAATCAGGT ACAGGTGAAT GTAAAAGCTG GTTTGACATT TGCTACGGCA
CTGAGAGCGT TCTTAAGACA GGACCCCGAC ATAATAATGG TGGGAGAGAT ACGTGACTCG
GAAACAGCTG AAATAGCAAT CCGTGCAGCT ATCACGGGAC ACCTTGTTTT CAGTACATTG
CACACTAACG ATGCTGCAAG TTCTGTTACA AGAATGATTG ACATGGGAAT AGAGCCGTTC
CTGTTGTCTT CGGCTCTGGT TGGATTGATT GCGCAAAGAC TTGTAAGAAG ACTCTGTCCT
CATTGCAAGG AAGCTTTCCA GCCGGATAAG AATGAGAGAG AGATTCTTGG CTTGAAAGAT
GATGAAGAAG TTACAATATA TCGTGCAAAA GGGTGCGACG AATGTAACAA TACCGGTTAC
AAAGGAAGAA TAGCGGTTTA TGAGATTCTG ACGGTCAATA GGGAAATAAA GGAACTGATA
TCCAAGAACG TAAGTTCCGA TGTAATAAAA GATGCGGCTA TTAAAATGGG CATGAAAACA
TTGAGAATGA ACTGTACGAG GTTGGTTAAA GAAGGTATTA CTACGATAGA TGAGATGCTT
CGTATTGCAT ATTCCATAGA CTAG
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| Protein sequence | MLGVDTRGID EILLEMGVLK IVDLKKAWDI QRESNKNIED VLLELGLVSQ KDIMHANAVK
MGIPFVDLST YQISDSSVPL LITRNIANRY KVIPIEKENG VLTVAMSDPT DIFCIDDIRL
ATALEIKPVL ADVKEIERLI VEYFGEEKKP QESKLKAENE EQNKKEELLK MEEELLGREI
YNNIKADVET REPEFDLASK GFDQNTYNES GIFKDKIGNI LVRAGVITQD QLENALSIQK
KSGGLIGQIL VKQGYIDRRS LYEFLQKQMG VEYVDIEGIE IDEDIIGLVS PNLAKTHKVI
PIEKVDGNLK VAMSDPMNIF SIDDLRLTTG LEIIPCLADE EQISAQLEKY YGKASRKTSA
KEIEQKVADL DEEIKKVNEK IAVEITQTED EDTTIDISDL ENAPIVKMVN IIFQKAVATR
ASDIHIEPQE DCVLIRFRID GQLVEIMRYD RKILSSIVAR IKIISGLNIA EKRIPQDGRI
GIKIDDREYD MRVSVLPTMF GEKVVIRIAD KEGFNVSKKE LGFFEDDLEK FDQIISSPYG
IILVTGPTGS GKSTTLYTAL RELCKPNVNI LTVEDPVEST IKGINQVQVN VKAGLTFATA
LRAFLRQDPD IIMVGEIRDS ETAEIAIRAA ITGHLVFSTL HTNDAASSVT RMIDMGIEPF
LLSSALVGLI AQRLVRRLCP HCKEAFQPDK NEREILGLKD DEEVTIYRAK GCDECNNTGY
KGRIAVYEIL TVNREIKELI SKNVSSDVIK DAAIKMGMKT LRMNCTRLVK EGITTIDEML
RIAYSID
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