| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1041 |
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| Symbol | murD |
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| ID | 4811338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | - |
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| Start bp | 1244775 |
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| End bp | 1246175 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640106462 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_001037466 |
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| Protein GI | 125973556 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000538444 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGAATACCA AATTAAATGA CTTTAAAAAG AAAATTAAAA ATAAAAAAGT TGCCGTACTG
GGTATTGGAA TCAGCCATAC TCCGTTAATT TCATATTTGT ACCGGCTTGG GGCGGACATA
ACGGCTTTCG ACAAAGCGGA TGAGGTTAAG CTTAAGTCCA CATTGGAACA GTTTAAAGGA
ATGGATATTA AATATAGCCT GGGCGAAGGT TATCTTGACA ATCTGAAAGG CTTTGACATA
TTGTTCAGGA CTCCTGGTAT GAGGTATGAT ATACCTGAGA TTCTTGCCGC AAAGGAGGAA
GGAACTGAGG TAACTTCAGA AATGGAAGTA TTTTTTGAAC TTTGCCCGGC CGAAATTTTT
GCCGTGACAG GCAGCGACGG TAAGACCACA ACCACCACGC TTATATACAA CATGCTGAAA
GAGCAGGGAT ATAAGTGCTG GCTTGGTGGA AATATAGGCA TACCTTTGCT CAGCAAAATT
GAAGAGATAA AGGATACGGA CAAAGTTGTC CTGGAGCTTA GCAGTTTTCA GCTGCACACC
ATGACTAAAA GCCCGAATGT TGCGGTTGTG ACAAATGTTT CGCCCAACCA CCTGGATGTA
CATAAATCCA TGGAGGAGTA TGTATCTGCC AAAAAGAATA TTTTTAGATA CCAGTCGGCG
GAGGATAGGC TGGTACTTAA TTTTGACAAT GACATTACCC GGGAATTTGC CGGTGAGGCA
AAAGGAGATG TAGTTTATTT CAGCAGAAAA ACCGTACTTG AAAAGGGTGC TATGCTAAAA
GACGATATGC TGGTTTTCAG AGACGGAGAA ACTGAAACTG AAATTGCTAA AGCAAGTGAC
ATCGTAATTC CGGGAGTCCA TAACGTTGAA AACTTTCTTG CGGCCACCGC CGCGGTAATA
GACTGTGTCG ACAGGGATGT CATAAGAAAA GTTGCAACCA CCTTTACCGG GGTTGAACAC
AGGATTGAAC TTGTAAGGGA GATCAACGGT GTAAAATTTT ACAATGATTC CATAGCAAGT
AGCCCCACCA GAACGATTGC AGGATTGAAT TCATTTAAAG ATAAAGTAAT TCTGATTGCC
GGAGGCTATG ATAAAAAAAT ACCTTATGAT GCTTTAGGAC CGGTAATTGC GGAAAAGGTA
AAGTGCCTTG TGTTAATTGG ACAGACGGCT CCGAAAATTG AAAAGGTATT AAGGGATGAG
ACGGAAAGGT CGGGAAAAGG CTCCGATATT CCGATAAAAA AATGTACCTC TCTTGAGGAA
GCCGTTAAGG TGGCTTACCG TTTTGCTTCC GTCGGGGACG TAGTAATTTT GTCTCCTGCA
AGCGCCAGCT TTGATATGTT TAAGAATTTT GAAGAGAGGG GCAATAGATT TAAAGAAATT
GTCAACTCAA TTGAAGCCTG A
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| Protein sequence | MNTKLNDFKK KIKNKKVAVL GIGISHTPLI SYLYRLGADI TAFDKADEVK LKSTLEQFKG
MDIKYSLGEG YLDNLKGFDI LFRTPGMRYD IPEILAAKEE GTEVTSEMEV FFELCPAEIF
AVTGSDGKTT TTTLIYNMLK EQGYKCWLGG NIGIPLLSKI EEIKDTDKVV LELSSFQLHT
MTKSPNVAVV TNVSPNHLDV HKSMEEYVSA KKNIFRYQSA EDRLVLNFDN DITREFAGEA
KGDVVYFSRK TVLEKGAMLK DDMLVFRDGE TETEIAKASD IVIPGVHNVE NFLAATAAVI
DCVDRDVIRK VATTFTGVEH RIELVREING VKFYNDSIAS SPTRTIAGLN SFKDKVILIA
GGYDKKIPYD ALGPVIAEKV KCLVLIGQTA PKIEKVLRDE TERSGKGSDI PIKKCTSLEE
AVKVAYRFAS VGDVVILSPA SASFDMFKNF EERGNRFKEI VNSIEA
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