| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0960 |
|---|
| Symbol | |
|---|
| ID | 4811253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 1148613 |
|---|
| End bp | 1150325 |
|---|
| Gene Length | 1713 bp |
|---|
| Protein Length | 570 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640106379 |
|---|
| Product | SpoIID/LytB domain-containing protein |
|---|
| Protein accession | YP_001037387 |
|---|
| Protein GI | 125973477 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
|---|
| COG ID | [COG2385] Sporulation protein and related proteins |
|---|
| TIGRFAM ID | [TIGR02669] SpoIID/LytB domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000216534 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGGAAA GTTTGATGTC AAATTGCAAA TCAAAGACTA TTATGTTTCG ATTGATATTA
TCATTATTGA TAATGTATGT GTCGGTATTG TTTTCACAAA GTTTCATTGT ATATGCATAT
GAAGGAATTC CGGAGAAAGT AAGGATAGGC CTTATGTTTA ATGATCCGCA GACGGGTCAG
TATTCGGCAG TTTCAAGCTT TACTGTGGAC AGCAAAAAAG GCCTTCAATT TGGGTATTTC
TCGGAAAAGG GCTTTACGTG CCTTCTTAAA GAGCCTTCCG GTAATGCGGT TACTATAAGA
AAAGACGCAT TTTTTGTAAA AGGAAGCGAC GGATTTTCGG AATTCAATCC TTCTTCGGGG
AAAGTTCCTT CGGGAGAAGT TATTGGAGCT TATCATATAA AAATAGGAAA AGATTATAAA
GATTACAGTG CTCTTTCCAA AAGCCTTGCT GAAATGAAAC AAAAAGGCGT GAATGCCTAT
GCAGTCTATG ATGACGGCTG GCAAATCTGG ACGGGTTTTT ATGTTGACGA GAAGGAAGCC
AAAAAGGCAA TAACAAATCA GATAGATCCG GTTTTAAAGA ACGGGGATTA CAGTGTTGTA
TCTCCGTCCG AGTCAAGAAT AGTTGTTCTG TCAAAAGACG GACAGGTTAT GCTGATGTTT
GATTCACTAT ATTATGCATT CCAGGTGCAT CCCGAAGTCA GTGATGAAAC CGGTGTTTTA
AGGATTAACG GGGATGACGG GAAGAGATAT CGCGGAGCAT TTGAAATTTT GAGACTATCC
GGAAGTGACA TGACGGTAAT TAATGTGATT AATATTGAAG AATATTTGTA TGGGGTTGTG
CCCTATGAGA TACAGGCAAG TTCCCACCCT GAGGCCTTAA AAGCCCAGGC TGTTGCTGCA
AGAACCTATA CGGTGAAAAA CTTGAACAAA TACAAAAGGC TTCAGTTTGA CTTGTGCCCC
ACTGTGTATT CCCAGGTGTA TAAGGGCTTT GACGGAGAAA CGGCAGCAAC CAATAAAGCA
GTTGATGAAA CAAAAGGAAA GATAGTTACA TACAACGGAA AACCTGCGGA AGTGTTTTAT
TTCAGCTCCA GCGGTGGAAG AACCGAGGAT GTGAGGAATG TCTGGGGAAG TGAAGGGTAT
CCGTATCTTG TAAGCGTTGA AGATAAATAT GAATCGGGAG ATTCGTGGCA TTACAATTGG
GAAGTTTCGT TTACCGCACA GCAGATAAAG CAGATAATGA CCGACCGTGG CATAAAAATA
GGGGACATAC TGGGGATTTA TATAACAAAG AGATCCGAAG CGGGAAGAGC AACTGAGGTA
ATAGTGAAAG GAAGCCACGG AGAGAAAGTT TATACAAACA GCTCAACAAG AAGCTTTTTA
AACCTTGACA GTCAATGGTA TGACATTACG ACGGATGCAG ACATCTTTGT AAAAGGAAAT
GACGGTGAAC CGGTAAAAAC TCAGCTTGCA GGAAAAAAGG TGATGACGGC TTCGGGACTT
AAAACCGTAA GTCCTGCAAA CGGAAAGATA AATGTCGTTA CCTCAAGTGG TTTAAAAACC
GTTTCGCTGA TTCCGACGAC CTATACCTTT AAAGGAAAAG GCTGGGGCCA TGCAGTGGGA
ATGAGTCAGG AAGGAGCCAA GGGCATGGCG AATGCCGGAT TTACCTATGA AGAGATACTG
ACCCATTATT TCCCGGGAAC AAAAGTTGAG TAG
|
|---|
| Protein sequence | MVESLMSNCK SKTIMFRLIL SLLIMYVSVL FSQSFIVYAY EGIPEKVRIG LMFNDPQTGQ
YSAVSSFTVD SKKGLQFGYF SEKGFTCLLK EPSGNAVTIR KDAFFVKGSD GFSEFNPSSG
KVPSGEVIGA YHIKIGKDYK DYSALSKSLA EMKQKGVNAY AVYDDGWQIW TGFYVDEKEA
KKAITNQIDP VLKNGDYSVV SPSESRIVVL SKDGQVMLMF DSLYYAFQVH PEVSDETGVL
RINGDDGKRY RGAFEILRLS GSDMTVINVI NIEEYLYGVV PYEIQASSHP EALKAQAVAA
RTYTVKNLNK YKRLQFDLCP TVYSQVYKGF DGETAATNKA VDETKGKIVT YNGKPAEVFY
FSSSGGRTED VRNVWGSEGY PYLVSVEDKY ESGDSWHYNW EVSFTAQQIK QIMTDRGIKI
GDILGIYITK RSEAGRATEV IVKGSHGEKV YTNSSTRSFL NLDSQWYDIT TDADIFVKGN
DGEPVKTQLA GKKVMTASGL KTVSPANGKI NVVTSSGLKT VSLIPTTYTF KGKGWGHAVG
MSQEGAKGMA NAGFTYEEIL THYFPGTKVE
|
|---|
| |