| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0895 |
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| Symbol | |
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| ID | 4810516 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | - |
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| Start bp | 1071207 |
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| End bp | 1072283 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640106314 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001037322 |
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| Protein GI | 125973412 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000160053 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAACCCA ATAGCGATAA AAAAGCAATT TTGCTTGAGC TTATTGAAAA AGGCAAACAA
AAAGGAATGC TGACATACCA GGAAATTATG GATGCTTTTG AAGAAGTTGA TATCGATCCG
GAACAGATCG AAAAAATTTA TGAGACATTA GAAAACATGG GAATAGATGT AGTAGGAGAT
ATCGAAGCGG AAATGGAGGA TATCCAGCTT ACGGAAGATA ATCTGGATCT TTCCATTCCC
GAAGGTATAA GTATAGATGA TCCTGTCAGA ATGTATTTAA AAGAGATCGG CAAAGTACCT
CTTTTGACTG CAGAAGAAGA GATAGAGCTG GCTCACAGGA TTGAGCAGGG TGATGCCGAA
GCCAAAAGAA GACTGGCTGA GGCGAACCTG AGGCTGGTTG TAAGTATAGC CAAGAGGTAT
GTCGGAAGGG GCATGCTTTT TCTTGATTTG ATTCAGGAAG GAAATCTCGG GCTTATAAAA
GCGGTGGAAA AGTTTGATTA CAGAAAAGGT TTCAAATTCA GTACTTATGC CACATGGTGG
ATTAGACAGG CAATTACAAG AGCGATTGCA GACCAGGCAA GAACCATTAG AATACCTGTT
CACATGGTTG AAACCATCAA CAAGCTTATA AGAGTTTCCA GGCAGCTTCT TCAGGAGCTT
GGAAGGGAAC CTCATCCTGA AGAGATTGCC AAGGAGATGA ATATGCCTGT TGAAAAGGTA
AGGGAGATAA TGAAAATATC CCAGGAGCCT GTGTCGCTTG AAACACCTAT AGGTGAAGAA
GAAGACAGCC ACCTTGGGGA CTTTATACCT GACGATGACG CTCCTGCACC GTCAGAGGCT
GCTGCTTTTA CGCTTTTGAA AGAACAGCTT GTAGACGTTT TGGATACTTT GACTCCCAGA
GAAGAGAAAG TTTTAAGGCT TCGATTCGGG CTGGATGACG GACGGGCCAG AACCCTTGAA
GAAGTTGGAA AAGAGTTTAA TGTGACAAGG GAAAGAATTC GTCAGATCGA GGCAAAAGCG
CTTAGGAAAC TTAGACATCC GAGCAGGAGC AAAAAACTGA AGGATTATTT GGATTGA
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| Protein sequence | MKPNSDKKAI LLELIEKGKQ KGMLTYQEIM DAFEEVDIDP EQIEKIYETL ENMGIDVVGD
IEAEMEDIQL TEDNLDLSIP EGISIDDPVR MYLKEIGKVP LLTAEEEIEL AHRIEQGDAE
AKRRLAEANL RLVVSIAKRY VGRGMLFLDL IQEGNLGLIK AVEKFDYRKG FKFSTYATWW
IRQAITRAIA DQARTIRIPV HMVETINKLI RVSRQLLQEL GREPHPEEIA KEMNMPVEKV
REIMKISQEP VSLETPIGEE EDSHLGDFIP DDDAPAPSEA AAFTLLKEQL VDVLDTLTPR
EEKVLRLRFG LDDGRARTLE EVGKEFNVTR ERIRQIEAKA LRKLRHPSRS KKLKDYLD
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