| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0678 |
|---|
| Symbol | |
|---|
| ID | 4810296 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 833900 |
|---|
| End bp | 835201 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640106095 |
|---|
| Product | thymidine phosphorylase |
|---|
| Protein accession | YP_001037106 |
|---|
| Protein GI | 125973196 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0213] Thymidine phosphorylase |
|---|
| TIGRFAM ID | [TIGR02644] pyrimidine-nucleoside phosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATGG TTGATCTTAT AAACAAAAAA AAGCGGGGAG AAGCTCTGTC CGCCGCTGAA
ATTGATTATA TTGTCCAAGG CTATACAAAG GGCGAAATAC CGGACTATCA GATGTCGGCA
TTTTTGATGG CTGTATATTT CAAAGGAATG AACAGAGAAG AGACGGCAAA CCTTACTTTA
TCCATGGTCA ATTCCGGTGA AACGGTTGAC CTTTCGATGA TTGAAGGAAT AAAGGTTGAC
AAGCATTCTT CCGGTGGCGT TGGAGACAAA ATCAGTCTTG TAATAGTTCC GCTTTGTGCC
TGTGTTGGGA TACCGGTTGC AAAAATGTCC GGAAGAGGGC TTGGGCACAC CGGCGGAACA
ATTGATAAGC TGGAATCCAT AGAAGGATTT AGAACCGAGC TTACGAAAGA GGAGTTTGTG
AACAACGTAA ACAAATATAA AATGGCCATA GTAGGCCAAT CGCCAAATCT CACTCCTGCG
GACAAAAAAA TATATGCTCT GAGAGATGTT ACCGGTACGG TGGACAGCAT ACCGCTTATA
GCAAGCTCAA TAATGAGTAA AAAAATCGCC TCCGGGTGCG ATTGCATTGT CCTGGATGTC
AAGGTGGGAT CCGGAGCCTT CATGAAGTCC GTGGACGAAG CCGTGATTTT GGCAAAAACC
ATGGTGGAAA TAGGCAAAGC TTTGGGAAGA AGAACTGTTG CGGTTGTAAC AGACATGAGC
CAGCCTTTGG GATATGAAGT GGGAAACGCC AACGAAGTTA AAGAAGCAAT AGAAATATTG
AAGGGCCACG GTGCCGAGGA CGAGACAACG GTGGCACTCA CAATTGCATC CCATATGGCG
GTATTGGGCG GTGCTTTTTC AGATTATGAA TCGGCTTACA ACCATATGCG CAAATTGATA
GAATCCGGCA AGGCAGTGGA AAAATTAAAG GAATTAATCA GAATACAGGG GGGAAATACC
GATGTGGTGG ACAACCCAAA TCTTTTACCC CAGGCCGAAA AACACATAGA AGTTAAATCC
TCAACGGCAG GTTATATAAA TTCTGTCAAT GCCGAGGACA TAGGAGTTTC GGCAATGCTT
CTTGGAGCAG GAAGAAAGAC CAAAAACGAC AGCATAGATT TTTCAGCGGG CATCACAATG
GTAAAAAAGA TTGGGGATTG GGTTGATGAA GGTGATACTT TGTGCATACT TCACACAAAC
AAGTCCGACT TTCAAGAGGC AGAAAGGCTT TCCAAAAATG CTTTTGTCAT AAAAAACACG
AAACCTGAAC CGATTAAATA TGTTCACTGT GTTATTGACT GA
|
|---|
| Protein sequence | MRMVDLINKK KRGEALSAAE IDYIVQGYTK GEIPDYQMSA FLMAVYFKGM NREETANLTL
SMVNSGETVD LSMIEGIKVD KHSSGGVGDK ISLVIVPLCA CVGIPVAKMS GRGLGHTGGT
IDKLESIEGF RTELTKEEFV NNVNKYKMAI VGQSPNLTPA DKKIYALRDV TGTVDSIPLI
ASSIMSKKIA SGCDCIVLDV KVGSGAFMKS VDEAVILAKT MVEIGKALGR RTVAVVTDMS
QPLGYEVGNA NEVKEAIEIL KGHGAEDETT VALTIASHMA VLGGAFSDYE SAYNHMRKLI
ESGKAVEKLK ELIRIQGGNT DVVDNPNLLP QAEKHIEVKS STAGYINSVN AEDIGVSAML
LGAGRKTKND SIDFSAGITM VKKIGDWVDE GDTLCILHTN KSDFQEAERL SKNAFVIKNT
KPEPIKYVHC VID
|
|---|
| |