Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cthe_0567 |
Symbol | def |
ID | 4808242 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium thermocellum ATCC 27405 |
Kingdom | Bacteria |
Replicon accession | NC_009012 |
Strand | + |
Start bp | 695212 |
End bp | 695724 |
Gene Length | 513 bp |
Protein Length | 170 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 640105981 |
Product | peptide deformylase |
Protein accession | YP_001036996 |
Protein GI | 125973086 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000000525099 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGTAA GATTTATCAG AGAAGACGGA GACGAAATAT TAAGGAAAGT ATCAAAGAAA GTTGATGTTA TTGATGAAAG AATAAAAACA CTGCTTGATG ATATGGCGGA AACAATGTAT GCTGCCAACG GTGTTGGCCT TGCAGCGCCA CAGGTGGGAG TTTTAAAAAG AGTGGTTGTA ATTGACGTCG GAGACGGACT GATGGAACTT ATAAACCCTG AGATAGTGGA GCAGGAAGGA GAACAGATAG ATATAGAAGG TTGTCTTAGC ATACCCGGAG TTGCCGGAGA GGTAAAAAGA CCGGCAAGGG TTGTTGTTGA AGCTTTAAAT CGCGAAGGCG AAAAAATAAC GGTAGAAGGT AAAGAACTTC TTGCTGTTGC ATTGTGTCAT GAGATTGACC ACCTTGACGG TATTTTGTTT ACGGACAAAG TTATACGCTT TATTGATGAG GATGAAATGG AAAGAAGAAG AGAAAATAAA CGAAGAAACA AAATAAGACA AAATAAAGGA TAA
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Protein sequence | MAVRFIREDG DEILRKVSKK VDVIDERIKT LLDDMAETMY AANGVGLAAP QVGVLKRVVV IDVGDGLMEL INPEIVEQEG EQIDIEGCLS IPGVAGEVKR PARVVVEALN REGEKITVEG KELLAVALCH EIDHLDGILF TDKVIRFIDE DEMERRRENK RRNKIRQNKG
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