| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0461 |
|---|
| Symbol | |
|---|
| ID | 4808389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 576255 |
|---|
| End bp | 577565 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640105875 |
|---|
| Product | tRNA (uracil-5-)-methyltransferase Gid |
|---|
| Protein accession | YP_001036892 |
|---|
| Protein GI | 125972982 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1206] NAD(FAD)-utilizing enzyme possibly involved in translation |
|---|
| TIGRFAM ID | [TIGR00137] tRNA:m(5)U-54 methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGATT ATATAAATGT GATAGGCGCC GGACTTGCCG GCTGTGAGGC GGCATGGCAG
ATTGCCAAAA GAGGAATAAA AGTTAAGCTT TTTGAAATGA AACCGAAAAA ATTTTCACCG
GCACATCATA TGGAAACTTT CGCAGAGCTT GTTTGCAGCA ATTCCTTGCG TTCAAACCAG
CTGGAAAATG CAGTCGGACT CTTAAAAGAG GAAATGAGAC TTTTGAACTC CATAATTATG
AAATGTGCCG ATGCTGCCCA GGTTCCTGCC GGAGGAGCTC TGGCAGTGGA CAGAACAAAG
TTTTCTCAAA TGGTGACGGA GCTTATAAAA CAAAATGAAA ATATAGAAGT GATAAATGAA
GAGGTACGGG AGCTGCCGAA GGAAGGAATT ACAATTGTTG CCACAGGGCC TCTTACATCC
GGGGATCTGT CAAAACATTT GGCGGATTTT GTAGGTGAAG GCTATCTTCA TTTCTTCGAT
GCTGCGGCTC CTATTGTTAC TTTCGAGTCA ATAGACATGA ACAAGGCATT TAAGGCCGCA
CGTTATGGAA GGGGAACGGA TGATTACATA AACTGTCCCA TGAACAAAGA AGAGTACGAG
ATTTTCTGGA ATGAACTGGT GAATGCAGAA CTTGCGGAAG TAAAGGACTT TGACCGCGAA
GTGGTTTTTG AAGGGTGTAT GCCTGTTGAA ACCATGGCCA AAAGAGGAAA GGATACTCTA
AGGTTCGGTC CTTTAAAACC GGTAGGTCTT GTTGACCCCA ATACCGGAAA GGAACCTTAT
GCGGTTGTTC AGTTAAGACA GGACAACAGT GAGGGAACCA TGTATAATAT GGTAGGTTTT
CAAACAAGGC TTAAGTGGCC GGAGCAAAAA AGAGTGTTTC GATTAATACC GGGACTTGAA
AATGCTGAAT TTGTAAGGTA TGGTGTAATG CACAGAAATA CTTTCATAAA TTCGCCGGTA
CTTTTGGATG CCACATACTG CCTTAAAAAA TCTCCCAATA TTTATTTTGC GGGGCAGATT
ACCGGAGTTG AAGGATATGT GGAATCAGCC TCTTCAGGCA TGGTTGCGGG AATTAATGCT
GCCATGGATT TTCTGGGAAA GGATAGGGTT GTATTTCCGA AAAGTACAGC CATCGGTGCT
TTGAGTCATT ATGTTTCCGA CAGCAGTATA AAAAATTTTC AGCCCATGAA TGTTAATTTT
GGCATAATGG AGAGCTTTCC TCTCAAAATA CGGGATAAAA GAAAAAGAAA TTATGAGACG
GCAATGCGGG CTCTTAAGAT TTTAAAAGAG TATGTTTCAA AGTATTCGTA A
|
|---|
| Protein sequence | MIDYINVIGA GLAGCEAAWQ IAKRGIKVKL FEMKPKKFSP AHHMETFAEL VCSNSLRSNQ
LENAVGLLKE EMRLLNSIIM KCADAAQVPA GGALAVDRTK FSQMVTELIK QNENIEVINE
EVRELPKEGI TIVATGPLTS GDLSKHLADF VGEGYLHFFD AAAPIVTFES IDMNKAFKAA
RYGRGTDDYI NCPMNKEEYE IFWNELVNAE LAEVKDFDRE VVFEGCMPVE TMAKRGKDTL
RFGPLKPVGL VDPNTGKEPY AVVQLRQDNS EGTMYNMVGF QTRLKWPEQK RVFRLIPGLE
NAEFVRYGVM HRNTFINSPV LLDATYCLKK SPNIYFAGQI TGVEGYVESA SSGMVAGINA
AMDFLGKDRV VFPKSTAIGA LSHYVSDSSI KNFQPMNVNF GIMESFPLKI RDKRKRNYET
AMRALKILKE YVSKYS
|
|---|
| |