| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0408 |
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| Symbol | |
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| ID | 4808411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | + |
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| Start bp | 509847 |
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| End bp | 512435 |
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| Gene Length | 2589 bp |
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| Protein Length | 862 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640105822 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001036839 |
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| Protein GI | 125972929 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGTCA AGTGTTTTGG AATAAATCTT TGTGTTTTTT CACTACTTCT GATATTTTGT
CAGGTTGTTT ATGCTAAAAC TGACACGATT ATTTATGAAA CAGAGTTATA CGGTCCTCCG
TTTAAGTTCA TAGAGGACGG TGAAATATCG GGGTTTGAAA TCGAACTGAA CCAGTACATA
TTTTCAGGCA GTGAATACAG GTTTGATTAT AGGTTCAACA CCTGGGAAAA AGTTTATGAA
AAACTAAAAA ACGGAGAAAT TGATACCTGT GGTCTTCTTG TTGTAAATGA AGAAAGGAAA
AAAGACATAT TGTTTTCCGA TACGGTTATG AATATTTATA TTTCCATTTA TTCCAAGGAA
AAAAATAAGA ATATTGGAAT AAAAGATCTT GAGAAATATC GTGTGGGTGT GGGAAAAGAG
CAATACAGTG AGCATATTTT GAAAGACAGT GTGGGCATTA GCAATTACAC AACCTTTGTG
GATGTGGAAG AAGCGATAGA TGCTTTAAAT GAGGGAAAAA TTGATGTTAT TTTTGAAAAT
CAGGACGTCG TAAATCATTA TTTGATTAAA AAAGGTTTAA CCGGCAAAAT AATTCCCCAC
AAAACGGAGC TTTTTCCCGT CAAAGTTGCT TACGGTGTGA GTAAAAGAAA TCCCGAACTT
GTCAAATATA TTAATGAACG ACTGGATAGT GTGAAAAAAA ACGGTATATA TGAACAGCTT
TATAGAAAGC ATTTCCTGCG GCCTTCAGAT TTCTACAGAA GAAAACAGAG AATCAGAAAT
TTTGCCGCAA TGCTTGCACT GCTTGTCCTT TTGGCACTTT TGCAAGTTTA TATAAGGCAC
CTTAAGAAAA AGATATCAAA AGCATACCGT GAACTTCGCA AACAGCATGA ATGGCTGAGA
ATAACGCTCT CAAGCATTGG AGAGGCGGTA ATTACAACGG ATGAAAACGG AACCGTTACT
TTCAGCAATT ATGAAATTCA AAAGATGTTG GGCCTTTCTG AAGAAGAAAT ACTAGGCAAG
AAATTGGACA AGCTGCTTTC GGGATTGGTG GATAAAAGGG AAAAGGTTTA TAAAATTCCT
ATTGAAGAAG TTGTAAATCG GGGTAGCATG ATAAAACTTG AGACTGATTT GAGTCTTGTA
ACTCCGGGTG GGAGAAGACT TGTGGAGGGC ACTGTCGCAC CAATAAGAAA TGATTCGGAT
GTGATCATTG GGACAGTTGT TGCATTAAAG GACATTACGG AAATAAAGAA GAAAGATGAA
ATCCTGTACA ACATGGAGTA TTATGACCCG CTGACAGGGC TTCCCAACAG AAGTCTTTTT
TCCGACCGCC TTAAAATGGC TCTTGCCCAG TCGAAACGCA ATAATGAGAT GTGTGCGCTG
ATTATATTGG ATCTTGATAA TTTTAAAGCA ATTAATGATA CACTGGGGCA CTCCGTCGGA
GATATGCTTT TAAAGCAGGT GGCTGAAAAA ATAAAGGGTT ATCTGAGGGA AGTTGATACC
GTTGCAAGAA TAGGAGGAGA TGAGTTCATA ATTATTCAGC CTCAAATAAA AGATATAAAC
GATGCTACCA GAGCAGCGGA CAGAATATTG AAAAAATTTC AGCAACCGTG GATCTTGGAA
GGCAAGGAAT ATTATATAAC TGCCAGTATG GGCATCGGCA TTTACCCCAA TGGCGGAGAG
GATCCGCAAA CTATTTTTAA AAATGCGGAT ACGGCATTAT ACAGAGCCAA AGAGCTGGGA
AGGAATAATT ATCAGTTATA TACCGAGTCG ATGAACCAAA AGGTCCTTCA AAGGCTGGAT
ATTGAAAATA GCTTAAGGAG AGCAATTGAG AAGGAAGAAT TTGTACTGTT TTATCAACCA
CAGATCGATA TCAAAACCGG TAAGATTGTC GGTTTTGAAG CGCTTTTGAG ATGGTATCAC
CCTGATTATG GGCTTATGCC TCCCATGGAA TTTATACCCG TTGCAGAGGA TTCAGGGCTT
ATAGTGGTTA TTGGGGAATG GGTTCTTGAA ACTGCGTGCA GGCAGAACAA AAAATGGATT
GAGTGTGGAT TGGAGCCGCA TTTGATTTCG GTAAACTTGT CTGCAAGACA ATTTCAACGT
TCAAACATTG TTGAAGTGAT TGACAGAATT CGCAGTAGCA CCGGTTTGGC ACCGGAGCTT
TTGGAGCTGG AAATAACGGA GAGCACTGCG ATGCAAGACT TGAGTTTTAC AATAGATGTT
TTGAATCAGT TGAGGAAAAA GGGAATAAGG GTGTCCCTTG ATGATTTTGG AACCGGTTAT
TCATCACTGA ATTATTTAAG ACAGCTTCCT ATAGATACTC TCAAAATAGA TAAAAGTTTT
GTTCAGGACA TAAGGGCCAA CTCAAAAGAA GAGGCTATTG CTAAAACCGT TATCAGCCTT
GCTCACAAGC TTGACCTTAC TGTTGTGGCG GAAGGTGTTG AGACAAAAGA ACAACTTTTA
TTCCTTAAAA AGGAGAAGTG TGACAAGGCT CAAGGATATC TTTTCAGCAA ACCGCTGCCG
GCAGAGGAAA TTGAAAAAAT GTTAAGAGAT AAAAAATGTT TTGTCATCGG CGAGGAAGTT
GACAACTGA
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| Protein sequence | MKVKCFGINL CVFSLLLIFC QVVYAKTDTI IYETELYGPP FKFIEDGEIS GFEIELNQYI
FSGSEYRFDY RFNTWEKVYE KLKNGEIDTC GLLVVNEERK KDILFSDTVM NIYISIYSKE
KNKNIGIKDL EKYRVGVGKE QYSEHILKDS VGISNYTTFV DVEEAIDALN EGKIDVIFEN
QDVVNHYLIK KGLTGKIIPH KTELFPVKVA YGVSKRNPEL VKYINERLDS VKKNGIYEQL
YRKHFLRPSD FYRRKQRIRN FAAMLALLVL LALLQVYIRH LKKKISKAYR ELRKQHEWLR
ITLSSIGEAV ITTDENGTVT FSNYEIQKML GLSEEEILGK KLDKLLSGLV DKREKVYKIP
IEEVVNRGSM IKLETDLSLV TPGGRRLVEG TVAPIRNDSD VIIGTVVALK DITEIKKKDE
ILYNMEYYDP LTGLPNRSLF SDRLKMALAQ SKRNNEMCAL IILDLDNFKA INDTLGHSVG
DMLLKQVAEK IKGYLREVDT VARIGGDEFI IIQPQIKDIN DATRAADRIL KKFQQPWILE
GKEYYITASM GIGIYPNGGE DPQTIFKNAD TALYRAKELG RNNYQLYTES MNQKVLQRLD
IENSLRRAIE KEEFVLFYQP QIDIKTGKIV GFEALLRWYH PDYGLMPPME FIPVAEDSGL
IVVIGEWVLE TACRQNKKWI ECGLEPHLIS VNLSARQFQR SNIVEVIDRI RSSTGLAPEL
LELEITESTA MQDLSFTIDV LNQLRKKGIR VSLDDFGTGY SSLNYLRQLP IDTLKIDKSF
VQDIRANSKE EAIAKTVISL AHKLDLTVVA EGVETKEQLL FLKKEKCDKA QGYLFSKPLP
AEEIEKMLRD KKCFVIGEEV DN
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