Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cthe_0397 |
Symbol | |
ID | 4808400 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium thermocellum ATCC 27405 |
Kingdom | Bacteria |
Replicon accession | NC_009012 |
Strand | + |
Start bp | 493682 |
End bp | 495442 |
Gene Length | 1761 bp |
Protein Length | 586 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640105811 |
Product | ABC transporter related protein |
Protein accession | YP_001036828 |
Protein GI | 125972918 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000282557 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAGCA GAAAAATTCA AATGGACACT ATCCGAAAGG TTCTCAGATA TATAAAAAAA TATCGTGTTC TTTTATTCAT TTCCATTCTT CTTGCTGCGT CCACAGTAGC CTTAACTCTC TATGTGCCTA TTCTTATCGG TAACGCCATT GATTATATCG TAGGACCGGG TAATGTAAAT TTTGAAGTCG TAGCGAAAAT TCTTGTCCAA ATTGCTTTTG CCGTTGGTAT TACTGCTATA TTTGAATGGT TTATGTACAC AATAAACAAT AATATTACTT ACCAGGTGGT GCGGGATATT CGTGAAAAAG CTTTTCGAAA AATTGAGATT TTACCTCTTT CATATATAGA TTCTCATCCC CACGGTGAAA TTGTAAGCCG TGTGATTGCT GATGTTGAAC AGTTTGCTGA AGGTCTTCTG ATGGGCTTTA CCCAGCTTTT CACCGGTGTT GTTACGATTA TTGCCACGTT GATTTTCATG CTCACCATCA ATATAAAGAT TACTTTTATT GTAGTTATCC TCACACCGCT TTCTCTTTTT GTTGCAAATT TTATTGCAAA GCATACCTAT TCCATGTTTA AGTTGCAGTC CGAAACCCGC GGAGAGCAAA CTTCGCTTAT TGAAGAGATG ATAGGCAACG TAAAAGTGGT TCAGGCGTTT TCCTATCAGG AAGAAGCACT GAAGAAGTTC GACGAGATTA ATGAAAGGCT TGAAAAATAC TCCCTTCGTG CTGTCTTCTT TTCGTCTTTG ACCAATCCTT TAACCCGTTT TATCAACAGC CTTGTTTATG CGGCAGTCGC CCTTGCGGGC GCAATAGCGG TTATCAGCGG TGATGTGGGA AGTACCATGA CGGTGGGCGG ACTTTCCATA TTTTTAAGTT ATGCCAGCCA GTATGCTAAA CCCTTCAATG AAATTTCCGG TGTGATAACC GAGATGCAAA ATGCCCTTGC CTGTGCAGGA CGCGTTTTTG AGTTGATTGA AGAAAAACCT CAGGTTCCGG ATGCTGATGA TGCAGTCACG CTCAAAAACG CCAGCGGCAA TGTTGTTTTT GACAATGTGG CTTTTTCCTA TGTTCCTGAA CGTCCTTTGA TTCGAAATTT AAACCTTGAA GTAAAACCCG GACAGCGTGT GGCGATTGTT GGGCCCACCG GTTCCGGCAA AACTACTGTG ATTAATCTTT TGATGCGTTT TTATGATGTT GATTCCGGCA GCATAAAAGT GGAGGGTATA GATATTCGAA ACATCACCCG GCAAAGCCTG AGGGAAAACT ATGGCATGGT ATTGCAGGAT ACGTGGCTCA AATCCGGTAC CATTCGCGAA AATATCACAA TGGGAAAACC GGACGCAACG GAGGAGGAAA TCATTACTGC GGCAAAAGCC GCTCATGCCC ACAGTTTTAT CAAACGGCTG GAAAACGGCT ATGATACCGT CATCAGCGAG GAAGGAGGAA GTCTTTCACA GGGACAAAAG CAATTGCTCA GTATTGCCCG CGTTATGCTT TGTTTGCCGC CGATGCTTAT TTTGGATGAA GCAACATCTT CCATTGACAC CCGTACCGAG GTCAAAATTC AGGAAGCCTT TGCAAGACTT ATGCAAGGCC GCACAAGTTT TGTTGTTGCG CACCGCTTGT CCACAATACG GGAAGCCGAC GTTATTCTCG TGATGAAAGA CGGTGATATT ATCGAGCAGG GTACCCATGA AGAGTTGCTC TCGAAAAAAG GTTTTTATGC CAATCTGTAT AACAGTCAAT TTGCGCAATG A
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Protein sequence | MKSRKIQMDT IRKVLRYIKK YRVLLFISIL LAASTVALTL YVPILIGNAI DYIVGPGNVN FEVVAKILVQ IAFAVGITAI FEWFMYTINN NITYQVVRDI REKAFRKIEI LPLSYIDSHP HGEIVSRVIA DVEQFAEGLL MGFTQLFTGV VTIIATLIFM LTINIKITFI VVILTPLSLF VANFIAKHTY SMFKLQSETR GEQTSLIEEM IGNVKVVQAF SYQEEALKKF DEINERLEKY SLRAVFFSSL TNPLTRFINS LVYAAVALAG AIAVISGDVG STMTVGGLSI FLSYASQYAK PFNEISGVIT EMQNALACAG RVFELIEEKP QVPDADDAVT LKNASGNVVF DNVAFSYVPE RPLIRNLNLE VKPGQRVAIV GPTGSGKTTV INLLMRFYDV DSGSIKVEGI DIRNITRQSL RENYGMVLQD TWLKSGTIRE NITMGKPDAT EEEIITAAKA AHAHSFIKRL ENGYDTVISE EGGSLSQGQK QLLSIARVML CLPPMLILDE ATSSIDTRTE VKIQEAFARL MQGRTSFVVA HRLSTIREAD VILVMKDGDI IEQGTHEELL SKKGFYANLY NSQFAQ
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