| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0341 |
|---|
| Symbol | |
|---|
| ID | 4808490 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 428410 |
|---|
| End bp | 430203 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640105755 |
|---|
| Product | NADH dehydrogenase (quinone) |
|---|
| Protein accession | YP_001036772 |
|---|
| Protein GI | 125972862 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[COG3411] Ferredoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.024737 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTAT ATAGAGCACA TGTTCTGGTT TGTGGAGGTA CAGGCTGTAC TTCATCAAAC
TCCAATAAGA TAATCACTGA ATTGGAAGAA CAAATTGCCA GAAACGGTAT ACAGAATGAA
GTAAAAGTTG TAAGAACCGG ATGCTTTGGA CTTTGCGCCG AAGGCCCGAT TATGGTGGTT
TATCCTGAAG GTGCAATGTA TACAATGGTC AAAGTTGAAG ATGTGAAAGA GATAGTTGAG
GAGCATCTGG TAAAAGGAAG AATTGTAAAA AGACTTCTTC CAGGCGGCGG TGGCAAGGAT
GAAAAAGCTT CCCTTGAAGG CAATGACTTC TTTGCAAAGC AGCAAAGAAT TGCGTTAAGA
AACTGCGGTG TTATAAATCC TGAAAATATT GACGAATATA TTGCTTTTGA CGGATATAAG
GCATTGGCAA AAGTATTGAC TGAAATGACT CCCGAACAAG TTGTTGATGT TATTAAAAGA
TCCGGTTTGA GAGGAAGAGG GGGCGGAGGT TTCCCTACCG GACTTAAATG GGAGTTTGCA
ATGAAACAGG ATGCAGACCA GAAATATGTT TGCTGTAATG CCGACGAGGG AGACCCGGGA
GCATTCATGG ACAGAAGTGT CCTTGAAGGA GACCCTCATT CTGTAATTGA AGCTATGGCG
ATTGCAGGTT ATGCCATAGG CGCAAATCAG GGATATGTTT ATGTAAGAGC GGAATACCCG
ATTGCCGTAA AGAGGCTTGG CATTGCCATT CAGCAGGCAA GAGAATATGG ACTTTTGGGT
AAAAACATAT TTGGAACGGA CTTTAGCTTT GATGTTGATA TAAGGCTTGG AGCAGGTGCT
TTTGTGTGCG GTGAGGAAAC AGCTCTCATG ACGTCCATAG AGGGACACAG GGGAGAGCCA
AGACCAAGGC CTCCGTTCCC TGCGGTAAAA GGTTTGTGGC AAAAGCCGAC TTTGCTGAAT
AACGTTGAGA CTTATGCAAA CATTCCCCAG ATTATTCTGA AAGGTCCCGA ATGGTTTGCA
AGCATTGGTA CTGAAAAGAG TAAAGGTACC AAAGTATTTG CGGTGGGCGG TAAAATTAAC
AATACAGGTT TGGTAGAAAT TCCTATGGGT ACAACTTTGA GAGAGGTTAT TTATGACATA
GGAGGAGGAA TACCGAACGG CAAGAAGTTC AAAGCAGCCC AGACCGGAGG TCCTTCCGGA
GGATGTATTC CTGCAAGCCA TATTGATACG CCAATTGACT ATGATTCATT AACCCAGTTG
GGCTCAATGA TGGGTTCCGG CGGACTTATA ATCATGGATG AAGACACATG TATGGTTGAC
ATTGCAAAGT TCTTCCTTGA ATTTACTGTT GACGAATCCT GCGGTAAGTG TCCGCCGTGC
CGTATAGGAA CAAAGAGAAT GTATGAGATT CTTGAAAGGA TTACTGAAGG CAAGGGAGAA
GAAGGGGACA TTGAAAAGCT GGAGATGCTT GCAAAGAATA TAAAGGCATC GGCTTTGTGC
GGACTGGGTC AGACAGCTCC GAATCCTATT CTCAGTACTT TAAGATACTT CAGGCATGAA
TATATTGAGC ACGTAAGGGA TAAGAAGTGT GCCGCAGGGG TTTGCAAGGC GTTGATGCAT
TATGAAATAG ATGCTGAGAA ATGTAAGAGC TGCGGAATAT GCGCAAGACA ATGTCCTGTA
AAAGCAATAA GCGGAGAAAA GAAGGTTCCG TACGTTATAG ATCAGAACAA ATGTATCAAA
TGTGGCGTTT GTATGGAGAA ATGTCCGTTC AAGGCCATTT CCAAAAAAGC CTAA
|
|---|
| Protein sequence | MQLYRAHVLV CGGTGCTSSN SNKIITELEE QIARNGIQNE VKVVRTGCFG LCAEGPIMVV
YPEGAMYTMV KVEDVKEIVE EHLVKGRIVK RLLPGGGGKD EKASLEGNDF FAKQQRIALR
NCGVINPENI DEYIAFDGYK ALAKVLTEMT PEQVVDVIKR SGLRGRGGGG FPTGLKWEFA
MKQDADQKYV CCNADEGDPG AFMDRSVLEG DPHSVIEAMA IAGYAIGANQ GYVYVRAEYP
IAVKRLGIAI QQAREYGLLG KNIFGTDFSF DVDIRLGAGA FVCGEETALM TSIEGHRGEP
RPRPPFPAVK GLWQKPTLLN NVETYANIPQ IILKGPEWFA SIGTEKSKGT KVFAVGGKIN
NTGLVEIPMG TTLREVIYDI GGGIPNGKKF KAAQTGGPSG GCIPASHIDT PIDYDSLTQL
GSMMGSGGLI IMDEDTCMVD IAKFFLEFTV DESCGKCPPC RIGTKRMYEI LERITEGKGE
EGDIEKLEML AKNIKASALC GLGQTAPNPI LSTLRYFRHE YIEHVRDKKC AAGVCKALMH
YEIDAEKCKS CGICARQCPV KAISGEKKVP YVIDQNKCIK CGVCMEKCPF KAISKKA
|
|---|
| |