Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cthe_0299 |
Symbol | |
ID | 4808517 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium thermocellum ATCC 27405 |
Kingdom | Bacteria |
Replicon accession | NC_009012 |
Strand | + |
Start bp | 374726 |
End bp | 376096 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640105710 |
Product | MATE efflux family protein |
Protein accession | YP_001036730 |
Protein GI | 125972820 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000180901 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAAAAG AAACGGCGTC AATAAAAAAG ATGAGTGTCT TTGCTCTCAC ATGGCCGATA TTTATTGAAA CGCTGCTGAG AACAATGCTG GGAAATGTGG ATACTTTTAT GTTGAGTACA TATTCCGACG ATGCCGTGGG GGCAGTAGGG GTTGTAAGTC AAATAAGTTA TATACTTATC ATGCTGTACA ACGTTGTTTC GTCAGGAACA CTGGTGCTTA TATCCCAGTA TCTGGGCGCA AAAAAGAAAA AGGAAGCTTC AGTGGTGGCT GTCACTTCAA TTGCAGGCAG TTTGATATTT GGTTTGTTTG TCGGATTGGC TGTATTTCTG TTCAGAAGCC AGATATTAAC ATTTCTTAAT TTGCCGCCCG AACTTATGGG ATATGCTATG ACATTTTTGG GAATTGTCGG AGGATTTTCT TTTACCCAGG CATTGATAGC CACTTTGTCT GCAATAATCA GAAGCTATGG CAACACCAGG ATAACCATGT ACATTTCTGT CGGCATGAAT ATCCTTAATA TTATTGGAAA CAGTATTTTC CTGTATGGAC TGCTGGGGGC GCCGAAAATG GGAGTGACCG GTGTTGCCAT TGCAACTGTA ATAAGCCAGG CTGTCGGTGT TGTTGCTATG CTGATTGTAA TGCTGACAGG ACTTAATCAA AAATTTTCTT TCCGGGACCT TGTGCCGCTG CCGTGGGAGA TTTTAAGGGA TATATTGAAA ATCGGACTTC CTTCTGCGGG TGAAGGAATT GCTTACGAAG CATCTCAGCT TACCATTACC CGTATTATAA CGGTATTGGG AAAGGTTGCC CTTACAACCA GGGTATACAC TTTAAACATT ATGTATTTTG TAATGGTTTT TTCAGTAGCG GTTGGTCAGG GAACTCAAAT TGTTGTAGGC CATCTTGTGG GGGCGGGCGA TAATGAAAAA GCATACAAAA CATGTATTAA AAGTCTGAGA TATGCTGTTG TGGTGGCAAT CATTCTTGCG GGAATTGTTT CGTTCTTTTC GGAGCAGCTT CTTGGAATCT TTACGGATGA CCGGGCTATA ATTGAAATGG GGAGCAAACT CTTGCTGATT GCAGTTATTT TGGAGCCGGG AAGAGTTTTC AATATTGTTA TAATAAACTC TCTGAGAGCG GCGGGTGATG CCAGATTTCC CGTTATTATG GGTATTATAT CCATGTGGGG AATAGGAGTG TTGCTGTCAT ATTTCCTGGG TGTGGCCTGC GGCTTGGGAT TGATAGGTGT ATGGATAGCC TTTGCCAGTG ATGAATGGTT CAGAGGGATT GCCATGCTTC TGCGCTGGAG ATCCCGCGTC TGGTATAAAA TGGCACTTGT AAAAAATCAG AATATTGAAA TGCCGGCTTA G
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Protein sequence | MQKETASIKK MSVFALTWPI FIETLLRTML GNVDTFMLST YSDDAVGAVG VVSQISYILI MLYNVVSSGT LVLISQYLGA KKKKEASVVA VTSIAGSLIF GLFVGLAVFL FRSQILTFLN LPPELMGYAM TFLGIVGGFS FTQALIATLS AIIRSYGNTR ITMYISVGMN ILNIIGNSIF LYGLLGAPKM GVTGVAIATV ISQAVGVVAM LIVMLTGLNQ KFSFRDLVPL PWEILRDILK IGLPSAGEGI AYEASQLTIT RIITVLGKVA LTTRVYTLNI MYFVMVFSVA VGQGTQIVVG HLVGAGDNEK AYKTCIKSLR YAVVVAIILA GIVSFFSEQL LGIFTDDRAI IEMGSKLLLI AVILEPGRVF NIVIINSLRA AGDARFPVIM GIISMWGIGV LLSYFLGVAC GLGLIGVWIA FASDEWFRGI AMLLRWRSRV WYKMALVKNQ NIEMPA
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