| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0257 |
|---|
| Symbol | |
|---|
| ID | 4808605 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 316137 |
|---|
| End bp | 317189 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640105669 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | YP_001036689 |
|---|
| Protein GI | 125972779 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTTGA AGGAAATTTT AAAAATGGGT GTTGATAATA AAGCTTCTGA TATACATTTG
ACTGTGGGAA GGGCTCCTTC TTTCAGAATA AACGGGAAAA TGAAAACGTT TACTGACAAT
ATACTGTCTC CGGAAGATAC AATGAGCTAT GCCAAAGAGT GTTTGGACAA GGAAAAGCTT
GAGCATCTTA TGGCTGTGGG AGAAGTTGAT TTTTCAATGA CGGTTCCCGG AATTTCCAGG
TTCAGGGTGA ATGTGTTTTT TCAAAGGGGC TCTGTGGCAA TAGTATTCAG AATACTTGCT
TCCACAATAC CGACTCTGGA TTCTTTGAAT TTTCCTGAAG TGATTAAGGA CATTTGCAAA
ATAAAAGAAG GGCTCATACT TGTAACCGGC CCCACGGGAA GCGGAAAATC CACTACCATG
GCTTCAATTA TCAATGAAAT AAACTCTACC AGGGAAGGGC ATATATTGAC TCTTGAAGAC
CCTATCGAAT ATATTTTCAA GCATGACAAA TGTGTCGTAA ACCAGAGGGA AATATCCCAG
GACAGCAAGT CCTATGCCAG TGCTTTAAAA GCTGCCTTAA GAGAAGACCC CGATGTGATA
TTCATAGGGG AGATGAGGGA CAATGAGTCT ATAAGTATTG CGGTTACGGC GGCAGAGACG
GGGCACCTGG TTCTTTCAAC CCTGCATACT CTGGGTGCGG CTAAAACCAT AGACAGGCTT
ATTGACGTTT TTCCACCCCA CCAGCAACAG CAGATAAGGG TCCAGGTATC CAGTGCGCTA
AAGGCGGTTA TATCCCAGAG ATTGATTCCC GATATTGATA ACAAAGGAAG AGTTGCGGCT
CTTGAAATAA TGATTGTTAC TCCGGCAATC AGCAATCTCA TAAGGGAAGG CAGAGTGGCA
GGAATTACTT CAATGATTCA GACGGGTGCG GCCCAGGGGA TGAAACTTCT CGATAAATCC
ATAGCCGAAC TCTATCAGCA AGGGCGCATA TCAAAAGAAA GTGCATACGA ATACTGTGCG
GACAGAGAGC TTCTAAAAAG GTTTATAGGG TAG
|
|---|
| Protein sequence | MELKEILKMG VDNKASDIHL TVGRAPSFRI NGKMKTFTDN ILSPEDTMSY AKECLDKEKL
EHLMAVGEVD FSMTVPGISR FRVNVFFQRG SVAIVFRILA STIPTLDSLN FPEVIKDICK
IKEGLILVTG PTGSGKSTTM ASIINEINST REGHILTLED PIEYIFKHDK CVVNQREISQ
DSKSYASALK AALREDPDVI FIGEMRDNES ISIAVTAAET GHLVLSTLHT LGAAKTIDRL
IDVFPPHQQQ QIRVQVSSAL KAVISQRLIP DIDNKGRVAA LEIMIVTPAI SNLIREGRVA
GITSMIQTGA AQGMKLLDKS IAELYQQGRI SKESAYEYCA DRELLKRFIG
|
|---|
| |