Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cthe_0129 |
Symbol | |
ID | 4808687 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium thermocellum ATCC 27405 |
Kingdom | Bacteria |
Replicon accession | NC_009012 |
Strand | + |
Start bp | 157782 |
End bp | 159299 |
Gene Length | 1518 bp |
Protein Length | 505 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 640105540 |
Product | metal dependent phosphohydrolase |
Protein accession | YP_001036563 |
Protein GI | 125972653 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2206] HD-GYP domain [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACAAAC ATGTTTCATT GCTCAGGAAA AGATATGTTG ATTTGCGGGA TACATATCTT GGCAGTGAGC TGAAAAAAGT TGAGTTGCTT TTTTATATTT CGGTTTCGAT AGCATTGGGG CTTATACAAT ATAAGCTGCT AAATTATGAA AATACATACA ACATTCGAGC TTATATCAGC CATATACAAT CATGCATTGT GATTCTTATG GCCTTTCGAT TTGGCTATGT GGGACTGGCC ACGGCAGTGG TATTGGTTTT GGCTGAAACA ATATTCATAA TTGAAGAATA TTTGGTCAGT TTCGATAAAT ATCTTTTACT TGGGCTTACG CTGAAATTCT TTACAATATT TGTAACCAGT TTTATTGCAG TACTTACCAA CAGGCAGCAG ATTCAGAAGA AAAGGCTTGA ACGGATGGCA ATTACGGATG AATTGACCGG GGCATACAAT CAGAGATTTT TTCACATGGT GCTTGAAAGT GAGCTTGAGA AGGCAAAAAA TAATAACGGT TCTGTGAGCC TTATAATGAT TGACATAGAT AACTTTAAAA TGTACAACGA TATTTACGGA CGTGACTTTG GTGACAATAT ATTGAGGACA ACTGCAACAA TCCTTTCGGA AATTTTGGAC GAAGGCAGCT ATTTGTGCCG ATACGGCGGA GATGAATTTG CTGTTATTAC TACAAATACC CGGCTCGATA ATTTAGAGGA TATGGCAAAC AATCTTCGCC GGGAGTTTGA AAGACTTAAA CAAAAATATT ACAAACATAA ATTATACGAA AAGGTAACAC TGTCCATTGG TTTGTCGGAA TACCCCAACA TGTCGCGGGA CAAAAATGAA CTCATTTACC AGGCCGATAC AGCCTTGTAT CATGCAAAGA ACCTGGGAAA AGACAAGGTA CATCTCTATC AGGACGCGTT AATGCAAATA CGCAAAAATA TCAGTTCCGA CCACCAGCAG CTTATAGGAA TATTCAAGGG ATTGTTGAGT ACCATATCGG CAAAGGATAA ATATACTCAT GGACATTGCG AGCGGGTGGC GGCTTATGCG GTGCTGATTG CGGAGGCAAT GGGACTGAGT GCAAAAGAAA TCAGCACAAT TCAGTGTGCC GCTTTGTTGC ATGACATTGG AAAGATAGAA ATGCCCAGGC ACATATTAAA TAAAAAAGAA GAACTGACTG AAGAGGAAAT AAAATATTTA AGACAGCACC CTATATATAG TGAAAACATA CTTGAGCCTT TGGCGGACAT GGACAAGCTT ACCGATTATG TAAGGCACCA TCATGAAAGA TATGATGGCA AGGGTTATCC GGACGGCCTA AAAGGTAAGG AAATAAGCCT CGGTGCCAGA ATATTGTGTG TTGCAGACTC TTTTGATGCC ATGGTGTCCG ACCGCCCGTA CAGTAAAAGC ATGTCAAAGG AAGATGCTTT TAAAGAACTT GAGAAAAATG CGGGAACCCA GTTTGATCCG GAAATTGTAG AGATTTTCAT AAAAGCAATG AAATCGTATG CCGCATAA
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Protein sequence | MNKHVSLLRK RYVDLRDTYL GSELKKVELL FYISVSIALG LIQYKLLNYE NTYNIRAYIS HIQSCIVILM AFRFGYVGLA TAVVLVLAET IFIIEEYLVS FDKYLLLGLT LKFFTIFVTS FIAVLTNRQQ IQKKRLERMA ITDELTGAYN QRFFHMVLES ELEKAKNNNG SVSLIMIDID NFKMYNDIYG RDFGDNILRT TATILSEILD EGSYLCRYGG DEFAVITTNT RLDNLEDMAN NLRREFERLK QKYYKHKLYE KVTLSIGLSE YPNMSRDKNE LIYQADTALY HAKNLGKDKV HLYQDALMQI RKNISSDHQQ LIGIFKGLLS TISAKDKYTH GHCERVAAYA VLIAEAMGLS AKEISTIQCA ALLHDIGKIE MPRHILNKKE ELTEEEIKYL RQHPIYSENI LEPLADMDKL TDYVRHHHER YDGKGYPDGL KGKEISLGAR ILCVADSFDA MVSDRPYSKS MSKEDAFKEL EKNAGTQFDP EIVEIFIKAM KSYAA
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