| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0032 |
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| Symbol | |
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| ID | 4808797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | - |
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| Start bp | 38313 |
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| End bp | 40085 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640105441 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_001036466 |
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| Protein GI | 125972556 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4124] Beta-mannanase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00146021 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGAAAA TTTTTGGCAG GACACTGAGT CTGCTGGTAA CATTTGCAAT GGTGTTTTCC
GTTCTTTTAG TCATGCCCGT TTCAACTTAT GCTGCATATT CCCTTCCTGT GGACGTTGAA
GCAGAAGATT GCACTCTTGG CAACGGTGCC GTTGTTACCA CCAATGTATA CGGAACTCAA
TATCCCGGAT ATTCCGGCGA CGGATTCGTA TGGGTGGCCA ACTCGGGAAC GATAACATTG
GAAGTCACCA TTCCTGAAAA CGGTATGTAT GAGCTTTCCA CAAGATGCTG GATGTATCTT
GGCAAAGAAG ATGAGACCAG AATGCAGGTT ATAAGCATCA ACGGAAAATC ACACAGCAAC
TATTTTATTC CAAACAAAGG CCAATGGATT GATTACAGTT TCGGATTCTT CTATCTTGAG
GCCGGTAAAG CAACTATTGA GATAGGTTCC TCCGGAAGCT GGGGCTTTAT ACTGTACGAC
AAAATATACT TTGACCATGC TGACATGCCC GATCATATAA TTGACCCGAC TCCGTGTGAT
CCAAATGCAA CTCCTGAAAC AAGAGCTCTT ATGAAATACC TTACCAGCGT GTACGGAAAA
TATGTTATTT CCGGCCAGCA GGAGATTTAC GGAAACGGAA ACGACGGCAA TTATGAACTT
GAATTCGATT ATATTTATGA GAAGACAGGC AAATATCCTG CAATCAGAGG CTTTGATTTC
ATGAACTACA ATCCTCTGTA CGGATGGGAA GACGGTACAA CGGCACGTAT AATCGACTGG
GTAAAAAATC GCGGCGGTAT TGCAACAGCA TGCTGGCATA TAAATATTCC CAGGGATTTT
GCAAGTTATA AACTCGGTGA GCCGGTGGAT TGGACAAACT GTACATACAA ACCGACAAGC
AGCTTTAATA CCGCAAACTG CCTTGATGAA ACAACAAAAG AACATGCTTA CCTGATGATG
GCAATTGAAG ACCTTGCAGA GCAGCTTTTA ATTCTTCAGG AGCAAAACAT TCCTATACTT
TTCCGTCCGT TCCATGAAGC TGAAGGCTAC AACAACACCG ACGGCTCCGG CGCATGGTTC
TGGTGGGGTT CTGCAGGTGC TGAAGTTTAC AAGGAACTCT GGAAACTTCT TTATAAAACT
CTTACCGAAA AATACGGCAT TCATAATTTG ATATGGGAAG TAAACCTTTA TACATATGCC
AATTCTTATG AATGGTATCC CGGCGATGAG TATGTGGACA TTATCGGATA CGACAAATAT
GAAGGTTCAC CCAATACCTG GGGCACAAGC GCCGCATCAT CATTATTCCT TACACTTGTA
AATTACACAA ACGACACAAA GATGGTTGCA TTGACTGAAA ATGACGTTAT TCCCGATATT
CAAAATATAG TTAATGAGGA AGCCTGGTGG CTGTATTTCT GCCCATGGTA CGGTGATTTC
CTTATGAGTC CCAGATACAA CGACCCCGTA CTTTTGAACA CTATCTACAA CAGTGAATAT
GTAATCACCT TGGATGAACT TCCGGAAAAC CTTTATGAAT ATGATGGTGA AATACCGGAT
ATCAACTACG GCGATTTGAA CAATGACGGA AATATAAACT CAACCGATTA TATGATACTG
AAGAAATATA TTTTAAAAGT TCTTGAAAGA ATGAATGTCC CTGAAAAAGC AGCAGATTTA
AACGGTGACG GTTCAATCAA TTCAACCGAT TTGACAATAT TAAAAAGATT TATAATGAAA
GCAATTACAA AATTTCCCGT TACACAAAAG TAA
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| Protein sequence | MGKIFGRTLS LLVTFAMVFS VLLVMPVSTY AAYSLPVDVE AEDCTLGNGA VVTTNVYGTQ
YPGYSGDGFV WVANSGTITL EVTIPENGMY ELSTRCWMYL GKEDETRMQV ISINGKSHSN
YFIPNKGQWI DYSFGFFYLE AGKATIEIGS SGSWGFILYD KIYFDHADMP DHIIDPTPCD
PNATPETRAL MKYLTSVYGK YVISGQQEIY GNGNDGNYEL EFDYIYEKTG KYPAIRGFDF
MNYNPLYGWE DGTTARIIDW VKNRGGIATA CWHINIPRDF ASYKLGEPVD WTNCTYKPTS
SFNTANCLDE TTKEHAYLMM AIEDLAEQLL ILQEQNIPIL FRPFHEAEGY NNTDGSGAWF
WWGSAGAEVY KELWKLLYKT LTEKYGIHNL IWEVNLYTYA NSYEWYPGDE YVDIIGYDKY
EGSPNTWGTS AASSLFLTLV NYTNDTKMVA LTENDVIPDI QNIVNEEAWW LYFCPWYGDF
LMSPRYNDPV LLNTIYNSEY VITLDELPEN LYEYDGEIPD INYGDLNNDG NINSTDYMIL
KKYILKVLER MNVPEKAADL NGDGSINSTD LTILKRFIMK AITKFPVTQK
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