Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSP_4284 |
Symbol | |
ID | 4796458 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides 2.4.1 |
Kingdom | Bacteria |
Replicon accession | NC_009008 |
Strand | - |
Start bp | 26034 |
End bp | 31097 |
Gene Length | 5064 bp |
Protein Length | 1687 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640103062 |
Product | YD repeat-containing protein |
Protein accession | YP_001033911 |
Protein GI | 125654718 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACGTCGT CGCAATATCA GGGCTCGCAG GCCTATAACC AGTCGCTGCA AAGCAACGAA TACATCAACA GGAATACCGG GTCGCTGGTG GTGTCGCTGC CGCTGGTGCA GTTGCGCGGG ATCACCGACG CCATCGGCCT GTCGCTGACG CTGGGCTATT CCGCGGGGGC GTCGGGCCAG CTGGGCCTGC CGCAGGGCTG GGGCTGGGGG CTGCCCTTCG TCGCCGCCGG GCAATCGCTG ACGGTCGAGG GCAAGACCTT TGTCATTGAC CCCAGCTGGA CCGACAGTTC GGGCTATCAA TCCGGCCTGC GTTATCTGAA CGACCATGGG CGCCTGTTCC AGACCGTCGT CCCGCCGCAG CCCGTTCCGG GCGGCGGCGG GACATACGGG TTCATGCTGC GCTATGACGA CGGATCGATC AGCTATTTCG ACGCCACGGG CAAGCTGATC GCGCATGCCG ACCTTTACGG CAACATGCTG CGCTATGCCT ATACCAACCC GCTGGGCGAC GTGTTCCAGA ACAGCCTAGC CAGCATCACC GACAGTTTCG GCCAGGTTGT CACGTTCGGC TATTCCGGCG GCACGATCGT GCTGACCCTG CCCGACGGAT CGAGCGTGAC CGTGGCGTTT TCGAGCCAGG GTGTACAGCA TGTCACCAAC CAGATCGGCG CGGTCACCGC CTTCAGCTAT GCCTCGGCCT CGGGCACGAC GGTCGTCGGC GCGATCACCT ATCCCACCGG GATGACAACG ACGCTGGCCT ACACCGGCCT CCGCTACATC GACGCCGGAG GGAATTCCGG CACCCGCCCG GCCGTGCAGT CGATGACCCG GACCGGACCG GGCGGCGCGT TCCTGGACCG GAGCGACTAC AGCTATGGCA CCGCATCGGG CGGCAATACC TATACCGGGG CAACCGCGGG GTACCGGATG GGAACGGCCT CGGACGGGCT CATGGACAGC AACAACACCG CCTACCAGTA CGACGTGCTG GAACAGCGCC GCGACGCGGG CGGCGCACTC ATTGCCGCCA ACCGGGTGTT CTTCAACTAC CTGCACTGCC CGCTGACGGA GCATGCCTAT CTGGTGGACG CAAACGGCCA TGCGCAAGAG GCGCACCGCA CCTCCTATAC CTACGACATC GTCACCGACG CCCATGCGCG AAGCGTGAAC ATGAACAAAC CGGTGACGAC GGTGCACAGC GTCTATGACG CGGCGGGCGG CACGTGGTCC GACAATTCGC AGGCAGATGT CGCCTATGAT CTTTATGGAA AGATCACGTC GAGCAGCCAG TACGACCTGA GCAGCGGCAG ACCCCGGCTG ACCGGCCAGC GGACGCACAG CTTTCTCCAG GTCGCGTGGG GAGGCGAGAT GCCGCAGCGA ACCGACTACG TCGATGCGGT CACCGGCCAG ACGACGCGGA TCGACTATGG GCTGACGGCC GACCAGAAAT CCATCGCCGC CACCACCGTC TCTACCCAGG CGGCGGGCGC GGGCAGTTTC GCCCCCTACA AGACCAAGAC CTTCCAGTTC GATCCCCGGG GCTGCCAGAC CGGCTGGACC CTGACCTGGG CCCAGGGCTA CAGCGGTCCC GAGGGGTCGG TCGCTTCGGT CGGCGAACAG ACCTCCTACA GCTACGATGC CGCGTCGCAT CAGCTGACCG TCGACACGAC TGACGCCAAC GGCCACACCC GGGTCGCGGT CTTCGACATG CGCCTGCCGG GCGGACCCTG CCTGAGCCAG ACCAAACCCG GCGGCGCGCG GCGCAGCTAT GCCTACGACC CGCTGGCGCG CCTGATGCAG GAAACCGACC CGCTGGGCGA TGTCACGACC CATGCCTACA CTCTGGCCGG AAACGGTGGC GGCGGCACCA ACACCAGCAC CGTGACCCAG TCCAACGGCT ATGTCCTCTG CACGACCTAC GATGCAAAGG GGCGCGCCGT CCTGATGATG GACAATGGCG ATCCAACCCA ATCGACGCCC AGCCTGTCGC GTACCCTGCG CCGCGTGAGT TTCAATGCGC TGGATCTGAA GGCGAGCGAG ACCGACGCCA CCGAACAGAC CCTGACGATC AGCTATGACG CGCTGGGACG TCAGATCGCC CTGGCCGATG CCCTGGGCAA TCAGAGCACG ACCATCTTCG ATGACGCGGC CCGAACGGTC AGCACCTCGA TGAACGGCGA TCTTCGCACG GTCATCACCC GTGACGGGCT GGGCAACACG ATCCAAACCG ACACCCATGC CGACAGCGGC TCACCCCAGG CGGGCCAGGT GCAGCGCGTG ACCTCGGCCT ATGACGGCTT TGGCCAAGTG GTGACCGAAA CGCATTTCAG CATCACCGGC GGCAACGTTG TGCAGAATTC GGTCAAGACC TTCGCCTATA CGCCGGACGG CAATTCCGAA GTTGTGGATT TCACCGGCAC CCCCGCGACC GCCGCGTTGC AGGCGACGCG CTGCACCACC ACGCAGCGCG ACCTGAACGG CAATCCGATC CTTGTCACCC GCAACGTCAG CTATAACGGC GCGGCGCAGC CCCTCGTTGT CAGCGAGACG CTGACCTATG ATCCGGTCGG CAACCTGATC GAGATCCGGA ACCAGGCCGG GCAGATCGAA CGGCTGAGCT ACACGACCGA CAGCGCCCTG CAAAGCCGCA CCCGCTATGA CGGCACCCAG ACGACCTATG CCTACGACGC CGCAGGCCAG GTGCTGAGCG AGACCACAAA CGGGCAGACG CGCACCTTCG CCTATCTTTC GAATGGCAGG ATCGACCATA TCACCGATCC GAGCGGCACC TTGCGCTATG CCTACTCTCT GGACGGCACG GCCTCGTCCG TGACCTATCC CGATGGCAAG ACGCTGTCGC TGACCAAGGA CGCCACCAGC CGGGTGGTGT CGATGACCCT GCCCGATGGC ACCGCGGCAA GCTATTCGTA CAACACCCTG AACCAGATCA TCGCGCAGAC CATGGGCGGG GTCACACTGA GCAACACCTG GGGCACGGCC AACCACGCCA ACGGCGTGTT GTTGAAACAG GTGCTGGGCG GCGCGACGGC GCAGACCACG CAGTTCGGCT ATGACGGATT CGGGGCAAAC GACAGCGTCG CGGTCACCGA CGGCGCGGGC ATCGGCGTCC TGAGCGCCGC CGCCACCCGC GACGGCTGGC GGAACCTGGT GTCGCTGACG CTCGCCTCGG CTGTGAACAC CGATCCTTCG GTGAACGTCG CGAAGACGAT GAGCTATGAC GGCCTGAAGC AGCTGGTGGG GATCACGCTG GCCCCGTCCG GCGGCGGGTC GCCGACCCAG GTAAGCTATG CCTACGATGG CGCCGCCAAT GTGCTGACCC GCACCCGGAA CGGCCAGCAG GAGAGCTTTG CCTACAACGC TCTGAACCAG ATCACCTCGG GCGCTGCCGC CTATGACGCC AATGGCCGCA TGGTCAGGGA CGTGGACGGG TCGACCTATG GCTTCGACCC GCTCGACCGG CTGACCAATG TCGGCATGGC CTCGGGGCCC TCGATGTCCA ACAGCTATGG TCCGCAGGGC GCGCTGGCCT CGGTGATCGA CGGCAGCACC GAGGACAGGT TCTATCCGCT GGCCGGGACC ATGGTGAGCG TGGCGGCGAA TGCCCAGTCG GGCACGCCGG AATGGCACGG GCTCATGTGG GCGGGACAGA TGCCCGTCGC GCGGGTCAGC GCCGGATCGG TCACCGCCTA TGCGGCGGCG TCGAAATCGG TCTATGTGCA CCGCACCTCG GCCAGCAGCA ACGCTCTGGC CATCTCGGCC TATGGCACGG TCACACCGCA ATCCGCGCTC GACCGCGCCA ACAGCTTCAA CTGGAATTCG CAGTTCACCG ACCCGGTCAG CAACCTGACC TATCTCAGGG CGCGCTGGTA CAACCCGGAA ACCATGCGCT TCTTGTCGCT CGATCCGCGC ATCACCATGA ACCGGTACGC CTATGCCATG GGCAACCCGA TCGCGAACTC CGACCCGCTG GGCCAGAGCT GGGAAGAGAT CGTGGGGCTG ATCGCCGGGG CCATCGTCGG CATCGGCGCA ACCGTGCTGA CCGGCGGGGT CGCGGGCGCA GCCGCGGCGG CGGTCTTTGG CACCGAATGC GTGGCCGCCA GCATCGGCGC GGGCGCGCTG GCGGGTGCCG TGGGCTCGGT CGCGGGGGAT CTGACCAGTG CCGCGATCTC GGGCCAGAAG ATCACCGGCG CGCGGGTCGG CATCGACCTG CTGAGCGGCG CGGTGGGGGG CGCGGTCGGC GCGGGCCTGG GCGGCGCGGC GGGCCGGGTC GCGATGCGCG GGGCGCTGAA CGCGGGCTGG TCGCAGGCGG CGATCACCCG CGTCGGCCTC ATCACCTCGG GCGCCATCGG CGGGCTGACC GGGGCCGCCG CCTCGGCCGG GGTCACCTCG GTCGCCTATC AGCAGCCGTT CTTCTCGACC GGGAACATCG TCAGCATGGC GGTGGGCTTT GGCGCCGGCG CGGGTGGCGG GATCCTGATG TCGGGCGCCT ATCTGGGCAA GATAAACGCC AAGATCATTC CGGTGCCCAT CGGCGAGGAC GAACTGCACC TGATCACCCC GGCGGTCGAC ACGCGCGGCG CGGTGGGCGA GAACGAGCGC CTTCTGGTGA TGGCGCCGCA GCCCGAGGCC GAAACCAGCG CCAACGGATT CCAGAGGCGC CCGGGCGGGT ACAAATACGC GATGCGGCTG GATTTCGGCG AGGGCGAAGG CGAGGGCCGC CCGCTGATGG CGCCGGGGCG CGAGGAATCG GTGGACACCA TCGCCGGGCA TGGCGCGGGC AACACCATCT TCGCCAGCGT CGATGTGAGT GGCGACGGAG CCCCCGATTT CGTACGCCCG ATCTCGGGCC GCAACTTTGC CCGGTATCTC GTGGACGAGG GCTGGCGCGA GCGTGAGGGG CCGATCAAGC TCATGTCCTG CTTTGGCGCC TTCCGCAATG CACGGGTCAT CGCCGACACG TTGGGCCGCG ATGTCTGGGC GGGTTATCCC GAGCTCGACC GCTATTCCTT CACCGGCTGG GTCCGCTTTC CGGCGCCGCA TTAG
|
Protein sequence | MTSSQYQGSQ AYNQSLQSNE YINRNTGSLV VSLPLVQLRG ITDAIGLSLT LGYSAGASGQ LGLPQGWGWG LPFVAAGQSL TVEGKTFVID PSWTDSSGYQ SGLRYLNDHG RLFQTVVPPQ PVPGGGGTYG FMLRYDDGSI SYFDATGKLI AHADLYGNML RYAYTNPLGD VFQNSLASIT DSFGQVVTFG YSGGTIVLTL PDGSSVTVAF SSQGVQHVTN QIGAVTAFSY ASASGTTVVG AITYPTGMTT TLAYTGLRYI DAGGNSGTRP AVQSMTRTGP GGAFLDRSDY SYGTASGGNT YTGATAGYRM GTASDGLMDS NNTAYQYDVL EQRRDAGGAL IAANRVFFNY LHCPLTEHAY LVDANGHAQE AHRTSYTYDI VTDAHARSVN MNKPVTTVHS VYDAAGGTWS DNSQADVAYD LYGKITSSSQ YDLSSGRPRL TGQRTHSFLQ VAWGGEMPQR TDYVDAVTGQ TTRIDYGLTA DQKSIAATTV STQAAGAGSF APYKTKTFQF DPRGCQTGWT LTWAQGYSGP EGSVASVGEQ TSYSYDAASH QLTVDTTDAN GHTRVAVFDM RLPGGPCLSQ TKPGGARRSY AYDPLARLMQ ETDPLGDVTT HAYTLAGNGG GGTNTSTVTQ SNGYVLCTTY DAKGRAVLMM DNGDPTQSTP SLSRTLRRVS FNALDLKASE TDATEQTLTI SYDALGRQIA LADALGNQST TIFDDAARTV STSMNGDLRT VITRDGLGNT IQTDTHADSG SPQAGQVQRV TSAYDGFGQV VTETHFSITG GNVVQNSVKT FAYTPDGNSE VVDFTGTPAT AALQATRCTT TQRDLNGNPI LVTRNVSYNG AAQPLVVSET LTYDPVGNLI EIRNQAGQIE RLSYTTDSAL QSRTRYDGTQ TTYAYDAAGQ VLSETTNGQT RTFAYLSNGR IDHITDPSGT LRYAYSLDGT ASSVTYPDGK TLSLTKDATS RVVSMTLPDG TAASYSYNTL NQIIAQTMGG VTLSNTWGTA NHANGVLLKQ VLGGATAQTT QFGYDGFGAN DSVAVTDGAG IGVLSAAATR DGWRNLVSLT LASAVNTDPS VNVAKTMSYD GLKQLVGITL APSGGGSPTQ VSYAYDGAAN VLTRTRNGQQ ESFAYNALNQ ITSGAAAYDA NGRMVRDVDG STYGFDPLDR LTNVGMASGP SMSNSYGPQG ALASVIDGST EDRFYPLAGT MVSVAANAQS GTPEWHGLMW AGQMPVARVS AGSVTAYAAA SKSVYVHRTS ASSNALAISA YGTVTPQSAL DRANSFNWNS QFTDPVSNLT YLRARWYNPE TMRFLSLDPR ITMNRYAYAM GNPIANSDPL GQSWEEIVGL IAGAIVGIGA TVLTGGVAGA AAAAVFGTEC VAASIGAGAL AGAVGSVAGD LTSAAISGQK ITGARVGIDL LSGAVGGAVG AGLGGAAGRV AMRGALNAGW SQAAITRVGL ITSGAIGGLT GAAASAGVTS VAYQQPFFST GNIVSMAVGF GAGAGGGILM SGAYLGKINA KIIPVPIGED ELHLITPAVD TRGAVGENER LLVMAPQPEA ETSANGFQRR PGGYKYAMRL DFGEGEGEGR PLMAPGREES VDTIAGHGAG NTIFASVDVS GDGAPDFVRP ISGRNFARYL VDEGWREREG PIKLMSCFGA FRNARVIADT LGRDVWAGYP ELDRYSFTGW VRFPAPH
|
| |