| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlab_1368 |
|---|
| Symbol | |
|---|
| ID | 4794789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanocorpusculum labreanum Z |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008942 |
|---|
| Strand | + |
|---|
| Start bp | 1388267 |
|---|
| End bp | 1389277 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640100053 |
|---|
| Product | tRNA splicing endonuclease |
|---|
| Protein accession | YP_001030802 |
|---|
| Protein GI | 124486186 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1676] tRNA splicing endonuclease |
|---|
| TIGRFAM ID | [TIGR00324] tRNA intron endonuclease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.190431 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000000711532 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAAAGCAG AATTCGACGG AACCCAGGTA ATCGCCTCAT CCGAAGCTCT CTCCCTGTAC
GAGCAGAGCG GCTATGGACG GCCGGACAAA TCAGGAGTCC TCCGTCTCGA CCCCAAAGAA
GCCCTCTATC TGATGGCACG GGGTAAAATC GAGATCCCCG GACTCTCCTT TGATCAACTC
CTGGCCGAAT GCGCGAAAAA ACCCGGCTTT TTACGAAACT TCGTTGTATA CAGAGACATC
AGGGAACGCG GGTATGTCGT GACCACCGGT CCGCAGGACT TCCGCGTCTT CCCACGCGGC
CTTCGACCCG GAAAAGGTCA GTCCCGGTAT CTTATGCGCG TCCTCTCTGA AAGAGACATG
GTCGATCTCG CCGCAGTCAT CAAAGATGCA GCAGCATCGG CAAACATGCG CAAACAGTTT
GTTTTGGCCG TGCTGGACGA CGAACATGAA CTCACATATT ACGAGGTAAG AATCGGTACA
CCCAAACCCA TTGAACAATC CGAACTCCCA AGCGGGATCC ATGCAAAGAT CGCCGGTATC
CCCTCGTATG TGACGGAAGA AGGAAACGGC ATCACCGAGA CGCTGAAAAA TCTCTGGCTT
GGAACGATGC TGGACGGGGT CAGATTGTTC CTCTCACCTC TCGAAACCGC ATGGCTTTTG
GAAAGCGGAC ATCTTGAAAC GGAACCGTTC ATGACCGCGG AAGAATACAT CAGTCTCGCC
GCATCAGCCG ACGCTGAGTT CATGGAAAAA CTCATCCTGT ACCGGTATCT GAAAGATCTC
GGATTTTTCC CAAGATCCGG ATACAAATAC GGTCACCACT TCCGCGTGTA CACACAAAGC
GGCAAACACT CCGAGATGCT GGCACATGCC GTGCCTTTTG GAACACTCAT GTCCATGAGT
GCGATATCCA GATCCGTCCG TTTGGCTCAC AGCGTCAGGA AAAAGATGCT TTTTGCCTCC
ATCTCCGGAA CAGAGATCAC CGAAGTCGAA TTCGCCAGAA TGAAAATGTG A
|
|---|
| Protein sequence | MKAEFDGTQV IASSEALSLY EQSGYGRPDK SGVLRLDPKE ALYLMARGKI EIPGLSFDQL
LAECAKKPGF LRNFVVYRDI RERGYVVTTG PQDFRVFPRG LRPGKGQSRY LMRVLSERDM
VDLAAVIKDA AASANMRKQF VLAVLDDEHE LTYYEVRIGT PKPIEQSELP SGIHAKIAGI
PSYVTEEGNG ITETLKNLWL GTMLDGVRLF LSPLETAWLL ESGHLETEPF MTAEEYISLA
ASADAEFMEK LILYRYLKDL GFFPRSGYKY GHHFRVYTQS GKHSEMLAHA VPFGTLMSMS
AISRSVRLAH SVRKKMLFAS ISGTEITEVE FARMKM
|
|---|
| |