| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlab_1169 |
|---|
| Symbol | |
|---|
| ID | 4794790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanocorpusculum labreanum Z |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008942 |
|---|
| Strand | - |
|---|
| Start bp | 1190488 |
|---|
| End bp | 1193082 |
|---|
| Gene Length | 2595 bp |
|---|
| Protein Length | 864 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640099842 |
|---|
| Product | DNA mismatch repair protein MutS |
|---|
| Protein accession | YP_001030605 |
|---|
| Protein GI | 124485989 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
|---|
| TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.29255 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCTCTC CCAAAAAACT CACTCCCGCC ATGGAACAGG TCAAAACATT CAAGGAAAAA
TACCCTGACT GTATCCTTTT CATGCGGATG GGTGACTTTT ACGAGACCTT CTTCGAAGAC
GCCGAGATCT GTGCCCGCGA ACTCGACATC GTCCAGACCT CCCGCTCCAA AGACCCCGAA
GGAAACCCGA TCCCTCTAGC AGGCATCCCC TACCACGCAG TCGACCTTTA CCTTCCCCGA
ATGATCCGCA AAGGCTACAA AGTCGCCGTC TGCGAACAGG TCGAGGACCC GAAACTTGCA
AAAGGCGTCG TAAAGCGGGA CGTCGTCAGA GTCGTCACTC CCGGAACGGC GATCGACGCC
GACGTCATCC CCGGTCCTAC CGCCCGCTAC CTCATGGCGC TGTGTTCCGA CGCCAAAAAA
ACCGTCATGG GTCTTGCCTT CCTCGACATC TCCACCGGCG AATTCTTCGT CCGGGAGATC
CCCTTCGAGC CGGGATTTTC CGCCCTCGCC ACCGAAATAG AACAGTACAA TCCTCTTGAG
ATCCTCGTCC CGCAGGGCAT CTCCGCGGAC CTCATCTCTT TCCTCGCCTC AACATGTAAG
GTCCTCACTC CCGGCCGCTC CGGTCTCTTC GTTGACGGCA CCGCCGAACT CACCGCCGCA
TTTTGCGTCT CCTCCTTAGA CGGATTCGAT GTCAGTTCCG CAGAATGCAT CAATGCTGCC
GCAGCCGCTC TCCGCTATGC AAAAGAGACC CAGAAAACAA GTCTCCCCCA CATCCGCGGA
TTCTCCAGAA AATACGCAAA CGACGCGATG ATCCTGGACG CGATCACGCT CCGGAATCTC
GAGATCCTCA ATCCCCTCCG AGGCGACCGG AATGATACGA CCCTCTTCGG CTTCCTCAAC
CGGACCAAGA CCCCCATGGG GAGCCGTGTT CTGCGAAGCA CCATCACCCG GCCGCTGACC
TCGCCGGAAA AGATAAATCA TCGTCTCGAC GCCGTCGGGT TCTTCACCCG GCGCCCCGTC
CTCCTCTCCG GGACCAGGAC CATCCTCTCC AGGTTCACCG ACATCGAACG GATCGCCGGC
AGGATCGCCT ACGGAAACGC CTCGCCGCGT GATCTTCTCG CTCTCGCCTC GAGTCTGGCC
GCCGTTCCCG AACTCACCGC CGAACTCTGC GGCGCCGAAG GTCTCCTCAA AGACGAACTC
GAACAGATCC CCTCCTTTGA CGGCGTCGCC GATCTGATCC TTTCAGCGAT CGTCGACGAG
CCGCCTCTCG TCTACAAAAA CGGCGGCGTC ATCAGGGAAG GATACAGCAG CGACCTTGAT
CAAATCAGAA ACATCGTCAC CAACGGCCGC GACTGGATCG CCGAACTCCA GCAGACCGAA
CGGGAACGCA CCGGGATCCG TTCGCTCAAG ATCGCCTACA ACAACGTGTT CGGCTACTAC
ATCGAGATCA CGAAGGCAAA CCTCCATCTC GTCCCAGACA CCTACGAACG CAAACAGACC
ACCGCAAACG GCGAGCGGTT CACGATCCCC GCCCTTCGCG AACGCGAAGC GGTGATGGCC
CAGGCCGACG ACCGCGTTCT CGCTCTCGAG ATCTCGCTCT TCGAATCCCT TCTGACGCAT
CTCTCGGAGT TCGTCCCGGC TCTCCAGCAG GCGTCCCGTT CGATCGGCAC GATCGACATG
ATCGCCGCGT TCGCAGACCT CTCCCTTTCC GGAAACTACG TCCGCCCCGA ACTCGTTCCC
GGAACGGAAC TCCTCATCCG TGACGGCCGT CACCCGATCG TCGAAAACAC CGTTCCCGGA
GGCTATGTCC CTAACGACAC CGAGATGAGT TCGATCGGCC AGCAGATCCT GATCCTCACC
GGCGCAAACA TGGCCGGTAA ATCCACCTAC ATGCGAAGCG TCGCTCTCAT CTGTATCATG
GCCCAGACCG GCTGCTTCGT TCCGGCATCC TTTGCCCGGA TCGGGATCGT CGACCGGGTC
TTCACCAGGG TCGGGGCATC CGACGACCTC GCCGGCGGGC AGAGCACGTT CATGGTCGAG
ATGCTCGAAC TCGCCAACAT CCTCAACAAT GCGACCGATC AAAGCCTCAT CCTCTTAGAT
GAGATAGGGA GGGGCACGAG CACCGTTGAC GGGTATGCGA TCGCCCGGGC CGTGCTCGAA
TATCTCCACG GAAAAGGAGG GGCGGGTCCC CGCACGCTGT TTGCGACCCA CTTCCACCAG
CTGATCGGGA TGGAGTCCGA GCTTCGCCGC GTGAGAAACT ATCACTTCGC CGTGAAAGAG
GACCAGCACG ACATCACGTT CCTTCGAAAA CTCATCCCCG GTGCGACGGA CAGAAGCTAC
GGTATCCATG TCGCAAAGAT CGCCGGCGTC CCGAAAAAAG TCCTGGTCCG TGCATCGGAC
CTCCTGAGAG AAGCTCTCAC GCAGGATGCA TCCTCCGGCG GGACGAAATA CTACACGCAG
ATGCTTCTAA CGGACGCCGA GCCGGCTCCG TCCGCCGTCG AAGAGCGGAT CCGCGACGCC
GATCCGAACA TGATGACCCC TATGCAGGCG CTTATGTTCA TCAACGAACT CAAGGCCCTG
CTGGAGAAGA AATGA
|
|---|
| Protein sequence | MVSPKKLTPA MEQVKTFKEK YPDCILFMRM GDFYETFFED AEICARELDI VQTSRSKDPE
GNPIPLAGIP YHAVDLYLPR MIRKGYKVAV CEQVEDPKLA KGVVKRDVVR VVTPGTAIDA
DVIPGPTARY LMALCSDAKK TVMGLAFLDI STGEFFVREI PFEPGFSALA TEIEQYNPLE
ILVPQGISAD LISFLASTCK VLTPGRSGLF VDGTAELTAA FCVSSLDGFD VSSAECINAA
AAALRYAKET QKTSLPHIRG FSRKYANDAM ILDAITLRNL EILNPLRGDR NDTTLFGFLN
RTKTPMGSRV LRSTITRPLT SPEKINHRLD AVGFFTRRPV LLSGTRTILS RFTDIERIAG
RIAYGNASPR DLLALASSLA AVPELTAELC GAEGLLKDEL EQIPSFDGVA DLILSAIVDE
PPLVYKNGGV IREGYSSDLD QIRNIVTNGR DWIAELQQTE RERTGIRSLK IAYNNVFGYY
IEITKANLHL VPDTYERKQT TANGERFTIP ALREREAVMA QADDRVLALE ISLFESLLTH
LSEFVPALQQ ASRSIGTIDM IAAFADLSLS GNYVRPELVP GTELLIRDGR HPIVENTVPG
GYVPNDTEMS SIGQQILILT GANMAGKSTY MRSVALICIM AQTGCFVPAS FARIGIVDRV
FTRVGASDDL AGGQSTFMVE MLELANILNN ATDQSLILLD EIGRGTSTVD GYAIARAVLE
YLHGKGGAGP RTLFATHFHQ LIGMESELRR VRNYHFAVKE DQHDITFLRK LIPGATDRSY
GIHVAKIAGV PKKVLVRASD LLREALTQDA SSGGTKYYTQ MLLTDAEPAP SAVEERIRDA
DPNMMTPMQA LMFINELKAL LEKK
|
|---|
| |