Gene BMA10229_1955 details

Gene Information

• Locus tag: BMA10229_1955
• Symbol: sctV
• ID: 4789718
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia mallei NCTC 10229
• Kingdom: Bacteria
• Replicon accession: NC_008835
• Strand: +
• Start bp: 2016046
• End bp: 2018118
• Gene Length: 2073 bp
• Protein Length: 690 aa
• Translation table: 11
• GC content: 69%
• Product: type III secretion inner membrane protein SctV
• Protein accession: YP_001025751
• Protein GI: 124381837

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGCTGA AATCCCTCAA ACTTCCCGCC GGCGGCGAGG TCGGCATCAC GGTGCTCGTC 
GTCGCGATCG TCTCGCTGAT GATCCTGCCG CTGCCGCCCG AGGTGATCGA CGTGCTGCTC 
GGCGTGAACA TCGCGATCAG CGTCACGCTG CTGATGGTGA CGATGTACGT CGGCAGCATC 
GTGTCGCTGT CGGTGTTCCC GTCGATCCTG CTGTTCACGA CGCTGTACCG GCTGTCGCTG 
AACATCGCGT CGACGAAATC GATCCTGCTG CACGCGAACG CGGGCGACAT CATCGAGAGC 
TTCGGCGAGC TCGTCGTCGG CGGCAATCTC GTCGTCGGCC TCGTCGTGTT CCTGATCATC 
ACGATCGTGC AGTTCATCGT GATCGCGAAG GGCTCGGAGC GCGTGGCCGA AGTCGGCGCG 
CGCTTCACGC TCGACGCGAT GCCGGGCAAG CAGATGAGCA TCGACGCGGA TCTGCGCGCG 
AACATCCTGA CGCCGGACGA GGCGCGCCGC AAGCGCGCGA CGCTCGCCAA GGAAAGCCAG 
TTGCACGGCG GGATGGACGG CGCGATGAAG TTCGTCAAGG GCGACGCGAT CGCCGGGCTC 
ATCATCACGC TCGTGAACAT CGTCGCGGGC ATCGCGATCG GCGTGATGTA CCACGGGATG 
ACGGCGGGGG ACGCCGCGAA CCGCTTCTCG ATCCTGTCGG TCGGCGATGC GATGGTGTCG 
CAGATTCCGT CGCTGCTGAT CTCGGTCGCG GCCGGCGTGA TGATCACGCG CGTCGCCGAC 
GATCACGACG ACGGCGACGG CACGTCGCTC GGCTCGGAGA TCGCCAGGCA ACTGGGCGGC 
AGCCATCGCG CGCTGTATTT CGCCGCGGTG CTGCTGATCG GCTTCGCGGC GGTGCCCGGC 
TTTCCGGCCG CGCTCTTCGT GCTGCTGTCG GGCATGCTCG CGTTCGCCGG CTACCGGCTG 
CAAAAGGGCG CGCGGCGCAC GACCGCGCGC GGCGAGCCGG TGATCGCGCT GCAGCGCGCG 
GGCGCGAAGA GCAGCACGCC GTCGATTCTG CCGCGCGCGC CGCTATTCAC CTGCGCGATC 
GGCGTGCGCG TCGCGCCCGA TCTCGTCGCC CGGCTCGCGC CCGCCGCGCT CGACCGCGCG 
TTCGACGAGG AGCGCGCGAA GCTGCAGGAA GAACAGGGGC TGCCGTTTCC CGGCATCACG 
CTGTGGACGA GCGACGCGCT GCCCGCGTCG ACGTGCGAGA TCCTGATGCG CGACGTGCCG 
CAGGCGCGGC TCGAGTTGCC GGCCGACCAG ACGATGCTGC CCGACGCGGC GTCGGACCCG 
GCGCTCGCCG GCCGCTGCAC GAAGCGCGGG CCCGCGGGCG GCCTCGCCGA GAGCTACTGG 
ATCGACGACA AGGCGGTGCC GGCCGGCGCG CGCGCGTGGC GCGCCGAGCA GGTGGTCGCG 
CACGAGACGA TCGCGCTGCT CAGGCGCAAT GCGCACCTGT TCCTGGGTAT TCAGGAAGCC 
CAATGGATAC TCGACCAGCT CGGCGTCGAT TATCCGGGGC TCGTCGCCGA AGTGCAGAAG 
ACGCTGCCGA CGCAGCGCAT CGCCGACGTG CTGCGCCGCC TGCTCGAGGA ACACATTCCG 
ATCCGCAACG CGCGCGACAT CATGGAGAGC CTCGTCGCAT GGGGGCCGAA GGAGAAGGAC 
ATGCTGATGC TCGCCGAGTA CGTGCGCGGC GACCTGTCGC GCTATCTCGC CTATCGCGCG 
GCGCGCGGCG CGCGGCAGTT GCCCGCCGTG CTGCTCGACA TGGCGGTCGA GCAGCACATC 
CGGCAGTCGA TCAAGCAGAC GCCCGCGGGC AACTTTCTCG CGCTGCCGCC CGAGCAGGTG 
CGCTATCTCG TCGACAGCAT CGCGTCGTTC GTCGGCGAAG CGCCGCGCGA CGATGTCGCG 
CTCGTCACGT CGATGGACGT GCGCCGCTAC ACGCGGCGCA TGATCGAGGC GCGGCTCGAC 
TGGCTGCCCG TCTATTCGTA TCAGGAGCTC GGCGACCAGG TGCAGTTGCA GCCGGTCGGC 
CGCGTGACGA TGCCGACGGC GGCCCACGCA TGA 

 

Protein sequence

MTLKSLKLPA GGEVGITVLV VAIVSLMILP LPPEVIDVLL GVNIAISVTL LMVTMYVGSI 
VSLSVFPSIL LFTTLYRLSL NIASTKSILL HANAGDIIES FGELVVGGNL VVGLVVFLII 
TIVQFIVIAK GSERVAEVGA RFTLDAMPGK QMSIDADLRA NILTPDEARR KRATLAKESQ 
LHGGMDGAMK FVKGDAIAGL IITLVNIVAG IAIGVMYHGM TAGDAANRFS ILSVGDAMVS 
QIPSLLISVA AGVMITRVAD DHDDGDGTSL GSEIARQLGG SHRALYFAAV LLIGFAAVPG 
FPAALFVLLS GMLAFAGYRL QKGARRTTAR GEPVIALQRA GAKSSTPSIL PRAPLFTCAI 
GVRVAPDLVA RLAPAALDRA FDEERAKLQE EQGLPFPGIT LWTSDALPAS TCEILMRDVP 
QARLELPADQ TMLPDAASDP ALAGRCTKRG PAGGLAESYW IDDKAVPAGA RAWRAEQVVA 
HETIALLRRN AHLFLGIQEA QWILDQLGVD YPGLVAEVQK TLPTQRIADV LRRLLEEHIP 
IRNARDIMES LVAWGPKEKD MLMLAEYVRG DLSRYLAYRA ARGARQLPAV LLDMAVEQHI 
RQSIKQTPAG NFLALPPEQV RYLVDSIASF VGEAPRDDVA LVTSMDVRRY TRRMIEARLD 
WLPVYSYQEL GDQVQLQPVG RVTMPTAAHA