| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_B0608 |
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| Symbol | |
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| ID | 4787451 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008826 |
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| Strand | - |
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| Start bp | 561993 |
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| End bp | 563987 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640093029 |
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| Product | sigma-54 dependent transcriptional activator |
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| Protein accession | YP_001023607 |
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| Protein GI | 124263137 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00482359 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGCCCA ACCCAACTCT TCACATGGGC TTTCACGATG CAACCCCGTA CGTGGGATTT
CACAAGGACG TGCGAGGCGT CCGCGGCTTG TGGGAGCGCT TCAACGCTGG GCTGCTCGAC
ATCGAGGAGC GCCGCACTCC CTACCACCAA CTGCTGCTCG GTGAGTGGCA GCGCTGCTCG
TCGCTGGGCG TCGATGTCGC GATGACCAAG GGCCGCCGCT TGAGCGATGA CGAGTTCCGG
CTGCGGCGCG AGGCCGAGCA GTTGCTGCTC GAGACCTCGG TGCCGATCGT TCAGGATGTC
GGCCACTTCC TGGTAGACGT GCCCGGCATC ATGATCCTGA CCGAGCGCAC CGGCACCGTG
TTGCACATAA CCGGCGACCC GGCGGTGCGT GAGCGCGCAG CCGTGCAGTC GGGCATCGTC
GAAGGCTCGC AGTGGAACGA GTTGACCGCC GGCACCAACG GCATGGGCAC GGCGCTCGCC
AAGGGCCAGC CGGTGCATGT GTTCGCCACC GAGCACTTTT GCGAAGGGTG GCACTCATGG
TCCTGCGCAG CATCTCCGAT TTTTGACGCC GACGGCCAGA CGGTGTTAGG CATCATTGAC
TTCACCACCA TCGAGGCCGA CTTCCGCGAC CAGGCCCTCG GCTTGACGGT CTCTGTCGCC
AATTCGATCC AGGCGCGCAT GGCGCTGCAC CGAGAGCTCG AGCGCCGTCG ACTGCTAACG
GCATTCAGCG ACGCTGCGCG ACACTACCCC CACGACGACA TGCTCGCGCT GGACCATGCT
GGCCGACCCG TGATGCACAC CCCCAACGAG CGCTGCCGGC AGATCACCGA GCGCTGGGTC
TCGGCTGGCT CCGACGACAC GGTTGCTGTG CGCACGACCA TCGACGTTGA AGCGCCAAAC
TCTGGCACTC GAATCGGCAC CATCGTGCTG CTGGCCAAAC CGTCCGGCTA CCAGCGCGTG
TTCCGCACAG AGTTCAAGGG CACGACTGCG ATCGAGCAGG TTGGCCGCTT TGGCGAGTTC
GCTTCGCGCG ACCCGGACAC GCGGCGGATG TTCGACGACC TGCAGCGCAT CGCCGCGGCC
GAAGTCAACG TCCTCATTAT CGGCGAAACT GGCACCGGCA AGGAGCTTCT GGCGCGGCAA
GTGCACGCTT GCAGCCCGCG CCATAACGAG CCTTATCTGC CGGTGAACTG CGGCGCCATT
AGCGAGCACC TGATGGAGAG CACCTTCTTC GGCTACGTGA AGGGCGCGTT CTCTGGCGCC
GACCCGCGTG GCCGAGCCGG TTACTTCGAG TCCGCCAAGG GAGGCACGCT GTTCCTTGAC
GAGGTTGGTG AACTGCCGCC GGCGATGCAG GTGGCCCTGC TACGCGTACT CGAGGACGGT
AGCTTCCAGC GCGTCGGATC TTGCGAGACG ATCCGCGCCT CCTGCCGCAT CATTGCAGCG
ACCCACCGCA ACCTCGAGGA ACTGATCGCA CAGGGCCGTT TCCGGCAAGA TTTGTACTTC
CGGCTCAAGG TCGTGCAGCG TACCATCAAG CCGCTGCGCG AACGGCCCTG TGACATCGAC
GTGCTCGTCG ATCAATTCGC CGAGGTAATG CGTCGCAAGC ACCGACTGGT GGCGGTCAAT
TTCACCGCCG AGGCGCGCGA CGCACTCAAA CGCTACCACT GGCCGGGCAA TGCCCGGGAA
GTGCGCAACG CCATCGAGGC GGCGCTGCTG TGCTCTGACG GCGATATCGG TCTGGAGTGT
CTACCACCGG AGGTGCTGCG GCGAGCCGAG CCGGAGGATC GGTCCGCCAG CGCCGTGCCC
ATTGAAAGCA TGGCATCGGT GCGGGATTAC GAGCGCCAGA TCATTGTTGG GATGCTGCGC
AAGTATCGCA AGGTCAACCA GGTGGCCCAG GCCTTGGGCA TAGCTCGCTC GACGTTGTAC
CGCAAGTTTG CGGAGTTGAA CATCAACCAG AGCGAGTTTA CGGGTGCCGA CATCCAACCC
GGCGCTGACT ATTAG
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| Protein sequence | MKPNPTLHMG FHDATPYVGF HKDVRGVRGL WERFNAGLLD IEERRTPYHQ LLLGEWQRCS
SLGVDVAMTK GRRLSDDEFR LRREAEQLLL ETSVPIVQDV GHFLVDVPGI MILTERTGTV
LHITGDPAVR ERAAVQSGIV EGSQWNELTA GTNGMGTALA KGQPVHVFAT EHFCEGWHSW
SCAASPIFDA DGQTVLGIID FTTIEADFRD QALGLTVSVA NSIQARMALH RELERRRLLT
AFSDAARHYP HDDMLALDHA GRPVMHTPNE RCRQITERWV SAGSDDTVAV RTTIDVEAPN
SGTRIGTIVL LAKPSGYQRV FRTEFKGTTA IEQVGRFGEF ASRDPDTRRM FDDLQRIAAA
EVNVLIIGET GTGKELLARQ VHACSPRHNE PYLPVNCGAI SEHLMESTFF GYVKGAFSGA
DPRGRAGYFE SAKGGTLFLD EVGELPPAMQ VALLRVLEDG SFQRVGSCET IRASCRIIAA
THRNLEELIA QGRFRQDLYF RLKVVQRTIK PLRERPCDID VLVDQFAEVM RRKHRLVAVN
FTAEARDALK RYHWPGNARE VRNAIEAALL CSDGDIGLEC LPPEVLRRAE PEDRSASAVP
IESMASVRDY ERQIIVGMLR KYRKVNQVAQ ALGIARSTLY RKFAELNINQ SEFTGADIQP
GADY
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