| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_B0371 |
|---|
| Symbol | traC |
|---|
| ID | 4787999 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008826 |
|---|
| Strand | + |
|---|
| Start bp | 320102 |
|---|
| End bp | 322531 |
|---|
| Gene Length | 2430 bp |
|---|
| Protein Length | 809 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640092803 |
|---|
| Product | F-pilin subunit assembly into extended F pili |
|---|
| Protein accession | YP_001023381 |
|---|
| Protein GI | 124262911 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
|---|
| TIGRFAM ID | [TIGR02746] type-IV secretion system protein TraC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.221651 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGGAT TCCTGAGGCA AGAGCGGGAC AACGTCCCAT TCGCCAATCT CACTGTGATG
GCGCATGACC CAGCCACGCG GTTGTTTCAC ATGACCGACG GCGAGGTCAG CTATCTCGGC
GCCTGCTTCG TTGGTGACCC GCTGACCGGC GCAGACCAGT CGACCGTGGA CAAGTTCAGC
TCCGCCTTCG GAATGCCTTT CCCGGCCGGT ACCTTCGTAC AGATCGGCCT GCTGTCGACG
CCCGACGTCG ACGAGTATCT CGACGCCTAC GTCGGCGCGA AGGCGCAAGA CGGCGTCCTC
GGCGCTCTCG CTGCTCGCCA CCGCGACCTC ATCTCCTCGG GGCGCGAGAA GCCGCTGGTA
TCGCGCTCGG GCATCTACCT GCACCGGCAG CGCCTGGTGA TCACGATCAA GACGCCGCTC
CACAACAATC GACCGACCGA GGCCGACATC TCTTCGGCCA AGGAGTATGC CGACCGCCTG
CAGGAAGCGC TCAAGGCCTC CGGCCTGCAC ATGGAGGCCC TGGACGCGCC GCGCTACGTC
GCGCTCATGC GCCTGATGAC GCACCCTCAC GACCCCATCG ACGACCGCTA CGACGCGCAC
AAGCCGATCC GCGAGCAGAT CTTCTTCCCC GGCGATTCGG TCAGCTACGA CGACAAGTCG
ACGATCAGCT TCCACGACGG CAAGCACTTC GCCAAGCTGC TGAGCGTGAA GCACTTCCCG
AAGCGCGCAA CGCTCGGGCT CATGAACTTC ATCGTCGGAG AGCCGCAGGG GCTGTCGAAC
CAGATCACGG AGCCCTACTG GATCACGCTG ACGCTGCACT ACCCCGACCA GGTCAAGAAG
GCCGACTGGG TGCGCGGCCG CTCGGCCATG ATCAATCACC AGGTCTTCGG CCCGACGGCA
CACATGATCC CGGTGCTCGG CTACAAGAAG GCAGGCATCG ACACCCTGGT GCACGAGATG
GAGGGACGTG GCGCGGTCCT CTGCGACGTC AACTTCTCGA TCTTCCTGAT CTCACGAGAC
AGGAGCCGTC TCAACAAGTC GATCGCCGGC CTGCAGGCCT ACTACTCGTC GCTCGCCTTC
GAGTTCCGCG AGGACAGCCG CATCCTCGAG ACGATGTGGG ACAACCTGCT GCCGCTGAAC
GTCAGTGCGC CGGCGATCGA GAAGACCTTC CGTTTCCACA CCATGGCCGT GTCGCAGGCC
GTCTGCTTCC TGCCGATCAT CGGCGAGTGG CGCGGCAGCG GCGTGGGCCG CTCGGTTCTG
ATGGTTACGC GACGCGGACA GCCGGCCCTG TTCGACCTCT ACGATTCGTC GACCAACTAC
AACGGGGTCG TGTTCGCCGA GTCCGGCGCC GGCAAGTCGT TCTTCACACA GAAGCTGGTC
TCGGACTACC TGGCGGAGGG CGCCAAGGTG TGGGCGATCG ACGTCGGCCA CAGCTACAAG
AAGCTGTGCC GCTCGGTGGG TGGCGAGTTC GTCGAATTCC ACGCCGAGAG CAGGATCTGC
CTCAACCCGT TCACGAACAT CGACGGCAAC CTGGACGAGG AGATGGACAT CCTCAAGGCG
ACCATCGCCA AGATGGCAGC GCCCGAGGAG TCGCTGTCCG ACTACCAGAT GGCCATCCTC
GAGCAGGCGA TCACCAGCGT CTACACGAAG TTCGGCAACA AGGCCAACGT CATCGCGATC
GTCGAGTTCC TGATGGCGCA AACGGACAGC GAGGCGCACC GCCTGGCGAA GCAGCTCTAT
CCGTTCGCAG GCGGCGCCTA CACGCGCTGG TTCGATGGCG ACAACAATCT CGACCTCGAC
AACGCGTTCG TCGTGCTGGA GCTCCAGGAC CTCAAGGGCC GCAAGGCGCT CCAGCAAGTG
GTGCTGCTGC AGCTCATCTC GCGCATCAAC CACGAGATCT ACCGCACGCA CGGCCGCAAG
AAGATCCTGA TCATCGACGA GGCCTGGGAA CTGCTGGACG ACCCGCTTAT GGCCAAGGCT
ATGGAAGCGG CCTATCGCAA GGCACGGAAG CACGACGGCG CTGTTCTGGT CGTGACCCAG
TCGCTGGCCG ACCTGTACAA CTCACCCAAC TCGCGCGCGA TCGTGGCGAA CTCGGCCTGG
CAGTTCATCC TGAAGCAGAA CGGCGAGGCC GTCGACGCGG CGATCGATGG TGGCCAGTTC
AAGATCGAGC CGTACGGCGC GTACATGCTG AAGACCGTGC ACACCGTGAG GGGTGCCTAC
TCGGAGGTCA TGGTCAAGCG CGGCGACAAC AGCTGGGGGA TCCTGCGCCT CGTGGTCGAC
CGGTTCACCC AGGTCATGTT CTCGACCAGC GGCGCCGAGC GTGATCAGAT CCTCGGCGCA
ATCGATCGCG GGGAGGATGT CGTCGAGGCC GTGGATGCGT ACATCGCCAG CGAGAACGAT
CGGGCCGGCA GAGAGCTGGA GGCCGCCTAA
|
|---|
| Protein sequence | MFGFLRQERD NVPFANLTVM AHDPATRLFH MTDGEVSYLG ACFVGDPLTG ADQSTVDKFS
SAFGMPFPAG TFVQIGLLST PDVDEYLDAY VGAKAQDGVL GALAARHRDL ISSGREKPLV
SRSGIYLHRQ RLVITIKTPL HNNRPTEADI SSAKEYADRL QEALKASGLH MEALDAPRYV
ALMRLMTHPH DPIDDRYDAH KPIREQIFFP GDSVSYDDKS TISFHDGKHF AKLLSVKHFP
KRATLGLMNF IVGEPQGLSN QITEPYWITL TLHYPDQVKK ADWVRGRSAM INHQVFGPTA
HMIPVLGYKK AGIDTLVHEM EGRGAVLCDV NFSIFLISRD RSRLNKSIAG LQAYYSSLAF
EFREDSRILE TMWDNLLPLN VSAPAIEKTF RFHTMAVSQA VCFLPIIGEW RGSGVGRSVL
MVTRRGQPAL FDLYDSSTNY NGVVFAESGA GKSFFTQKLV SDYLAEGAKV WAIDVGHSYK
KLCRSVGGEF VEFHAESRIC LNPFTNIDGN LDEEMDILKA TIAKMAAPEE SLSDYQMAIL
EQAITSVYTK FGNKANVIAI VEFLMAQTDS EAHRLAKQLY PFAGGAYTRW FDGDNNLDLD
NAFVVLELQD LKGRKALQQV VLLQLISRIN HEIYRTHGRK KILIIDEAWE LLDDPLMAKA
MEAAYRKARK HDGAVLVVTQ SLADLYNSPN SRAIVANSAW QFILKQNGEA VDAAIDGGQF
KIEPYGAYML KTVHTVRGAY SEVMVKRGDN SWGILRLVVD RFTQVMFSTS GAERDQILGA
IDRGEDVVEA VDAYIASEND RAGRELEAA
|
|---|
| |