| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_B0011 |
|---|
| Symbol | ligD |
|---|
| ID | 4787614 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008826 |
|---|
| Strand | + |
|---|
| Start bp | 7816 |
|---|
| End bp | 10410 |
|---|
| Gene Length | 2595 bp |
|---|
| Protein Length | 864 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640092422 |
|---|
| Product | ATP-dependent DNA ligase |
|---|
| Protein accession | YP_001023027 |
|---|
| Protein GI | 124262557 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
|---|
| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0339968 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGCAGGA CGGCACCCTC GACGCAGGCC AACGCCGACA CGCCGCTGTC GCGCTACAAC
GCCAAGCGCA ACTTCAAGGT CACCTCTGAG CCGGCCGGCG TACCGGCCAA GCGCTCAGGC
AAATCCAAGG CGCTGTGCTT CGTCATCCAA AAGCACTGGG CCAGCCGGCT CCACTACGAC
TTCCGCCTCG AGCTCGACGG CGTGATGCTG AGCTGGGCAG TGCCAAAGGG GCCCTCCTAC
GACCCGGCCT TGAAGCAGAT GGCCATCCAC GTCGAGGACC ACCCGATCAG CTACAACACC
TTCGAGGGCA CGATCCCGAA GGGCCAGTAC GGGGCCGGCA CGGTCATCAT CTGGGACCGC
GGCACCTGGG AGCCGGAGGG CGACCCCCGG GAGGGGATGG CCAAGGGCAA GCTGATCTTC
AAGCTCCACG GCCAGAAGCT GGCCGGCCTC TGGGAGCTGG TGCGCATCTC CAAGCCTGGC
GAGGTGAAGC AGGAGCAATG GCTGCTGCTC AAGAAGCGGG GCGACGCCTG GGCCCGCCCG
ACGTCGGAGT ACGACGTCAT CTCGGCCCTG CCGGACAGCG TGGTGGAGAA GCCGCTCGGG
CCAGTCGAAG AGCGGGAACA GCGGGCTGGC GGAACGGCGG CGGGAACGCC AGGGCCGAGC
GGCGAAGCGG ACCTGCAGCT TGCGGTCCAG GCGCCCCTTC CGGCCAAGCT GGCGCCACAG
CTGGCCACCC TGGCCTCGGC CGTTCCCAGC GGCGGCTCCT GGATCGTCGA GACCAAGTTC
GACGGCTACC GGATGCTTGC TCGCGTCGAC GGTGACGATG TCCGGCTCTT CACCCGCAAC
GGCAACGACT GGACGTCCAA GCTCAAGACC GTCGCCGCGG CCGTGAAGGA CCTCGGACTT
GACTCGGCCT GGCTCGATGG CGAAATCGTC GTCATCAACC AGGCTGGCGT GCCGGACTTC
AACCGCCTCC AGAACGCCAT CGACAACAGT CGCTCGAAGG ACATCAGCTT CTTCGTCTTC
GACGTCCCCT TCTTGGGCGG CATGGACCTG AGGAAGGTGC CGGTGGCCAG CCGCCGCCAG
GTGCTCAATG AGCTCTTCGA GCAGCGCCAG AGCGAGGTCG TACGGTTCAG CGAGGCCTTC
GACGTGCCGC CGGCGCACAT GCTCGAGGCC GCCTGCAAGA TGGGGCTCGA AGGCGTGATG
GTCAAGCGCG CCGACGCGCC CTACGTCTCC TCGCGGACGG ACACCTGGCT GAAGCTCAAG
TGCCAACAGC GGCAGGAGTT CATCGTCGTA GGCTTCACCG ACCGCGCCGG CGCGCCGACC
GAGGTCGGCG GGCTACTCCT CGGCTACCAC GAGGACGGGA AGCTGCGCTA CGCCGGCTCC
GTCGGTACCG GCTGGAACTC AGCCACCGGC CGGGAGCTGC GGTCAACGTT GGCCAAGCTC
CAGGTCGAGA AGCCGGCGCT CGAGGCGGGT GCCGTGAAGC CCGGCCGCTG GTCCAAGCGC
CCCGCCGGCG TCGAGCGCTG GGTCAAGCCC ACCATGGTGG TCGAGGTGGC CTTCTCTGAG
TGGACGCCCG ACGGGCACGT CCGGCATCCC ACCTTCCGTG GGGTCCGGAC GGACAAGCCG
GCAACGCAGA TCACCCGGGA GAAGGCGGAG CGGCCCGAGG GCCCGGTGAC CGAGACGGCG
GCCGCCGTGG CAGGGAAGCC TAGGACGAGC GTCAAGGTGA CGAATCCGGA CCGGGTCATT
GACCCGTCGA CCGGCTTCAA AAAAGTCGAC CTGGTGCGCT ACTACGAGTC CATCGCCGAC
TGGATGCTGC CGCATCTGAA AGACCGGCCG GTCTCACTCG TCCGAGCGCC CGAGGGCATC
ACCGGCGAGC AGTTCTTCCA GAAGCATCCG GAGACCAAGA TGCCGGGCAT GACGGAGCTG
GACCCAGCTC TGTGGCCCGG CCACTCTTCG CTGCTCGCCG TCGGCAGCGC CGAGGCCCTG
GTGTCAGCGG CTCAGATGAA CGTGGTCGAG TTCCACACCT GGAACTCCAC GATCAAGCGC
ATCAACGAGC CCGACCGGGT CATCTTCGAC CTCGACCCAG GAGAAGGCGT CAGCTGGGCT
CACCTGCAGG AGGCCGCAGT GCTCATGCAC ACGCTGCTGA CGGAGCTCGG CCTCGAGGCC
TGGCTGAAGA CAAGCGGCGG TAAGGGCCTC CACGTCGTCG TGCCGCTGGC GCCGAAGCTG
GACTACGACG CCGTGAAGGG CTTCTCCCAG GCGGCGGTGC AGCACATGGC GAAAACCATC
CCGCAGCGCT TCGTCGCCAA GTCCGGTGGC TCCAACCGAG TCGGACGCAT CTTCATCGAC
TACCTGCGCA ACGGTCACGG GCAGACGACG GCATCCGCGT TCTCGGCCCG GGTTCGGCCA
GGCATGGGAG TGTCGATGCC GGTGAGCTGG GAGCAGCTGC GCGAGCTCAA GAGCGGGTCG
CAGTGGAGCA TCGCGACGGC TCGGGAGTAC CTGTCGTTCC AGAAGAGCGA CCCGTGGGCC
GCGTACTGGA CGAGCAAGCA GACGTTGACC AAGGCAATGA GACTTCTCGG CTACGCCCCC
AAGAAGGCGG CATAG
|
|---|
| Protein sequence | MGRTAPSTQA NADTPLSRYN AKRNFKVTSE PAGVPAKRSG KSKALCFVIQ KHWASRLHYD
FRLELDGVML SWAVPKGPSY DPALKQMAIH VEDHPISYNT FEGTIPKGQY GAGTVIIWDR
GTWEPEGDPR EGMAKGKLIF KLHGQKLAGL WELVRISKPG EVKQEQWLLL KKRGDAWARP
TSEYDVISAL PDSVVEKPLG PVEEREQRAG GTAAGTPGPS GEADLQLAVQ APLPAKLAPQ
LATLASAVPS GGSWIVETKF DGYRMLARVD GDDVRLFTRN GNDWTSKLKT VAAAVKDLGL
DSAWLDGEIV VINQAGVPDF NRLQNAIDNS RSKDISFFVF DVPFLGGMDL RKVPVASRRQ
VLNELFEQRQ SEVVRFSEAF DVPPAHMLEA ACKMGLEGVM VKRADAPYVS SRTDTWLKLK
CQQRQEFIVV GFTDRAGAPT EVGGLLLGYH EDGKLRYAGS VGTGWNSATG RELRSTLAKL
QVEKPALEAG AVKPGRWSKR PAGVERWVKP TMVVEVAFSE WTPDGHVRHP TFRGVRTDKP
ATQITREKAE RPEGPVTETA AAVAGKPRTS VKVTNPDRVI DPSTGFKKVD LVRYYESIAD
WMLPHLKDRP VSLVRAPEGI TGEQFFQKHP ETKMPGMTEL DPALWPGHSS LLAVGSAEAL
VSAAQMNVVE FHTWNSTIKR INEPDRVIFD LDPGEGVSWA HLQEAAVLMH TLLTELGLEA
WLKTSGGKGL HVVVPLAPKL DYDAVKGFSQ AAVQHMAKTI PQRFVAKSGG SNRVGRIFID
YLRNGHGQTT ASAFSARVRP GMGVSMPVSW EQLRELKSGS QWSIATAREY LSFQKSDPWA
AYWTSKQTLT KAMRLLGYAP KKAA
|
|---|
| |