| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A3762 |
|---|
| Symbol | pilU |
|---|
| ID | 4785991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 3981338 |
|---|
| End bp | 3982474 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640092345 |
|---|
| Product | Pili biogenesis ATPase |
|---|
| Protein accession | YP_001022950 |
|---|
| Protein GI | 124268946 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0879223 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACGCG ATCAAGCGTC GAAATTCGTC AACGACCTGC TGCGCCTGCT GGTCGCCCGC
AACGGCTCCG ATCTGTTCCT GACGGCCGAC TTTCCTCCGG CGGTCAAGGT CGACGGCCGC
GTCACCAAGG TATCGCCGCA GCCGCTGACG CCGCAACACA CGATGGCCCT GGCGCGTTCG
ATCATGAACG ACAAGCAGGC GGCCGAGTTC GAACGCACCA AGGAGTGCAA TTTCGCGATC
GCGCCGACCG GCATCGGCCG CTTCCGGGTC AATGCCTTCG TGCAGCAGGG CTGCGTGGGC
CTCGTGCTGC GGACGATCCC GCAGACGCTG CCGACGATCG ACTCACTCGG CCTGCCGCAG
GTGCTGAAGG ACGTCGCCTC GACCAAGCGC GGGCTGGTGA TCTTCGTCGG CGCCACCGGC
TCGGGCAAGA GCACCTCGCT GGCCGCGATG GTGGACTACC GCAACGAGAA CTCCTACGGC
CACATCATCA CCATCGAGGA CCCGGTGGAG TTCGTGCACC CGCACAAGAA CTGCATCGTG
ACGCAGCGTG AGGTCGGCAT CGATACCGAC GACTGGGCCC CGGCGCTGAA GAACACGCTG
CGCCAGGCGC CCGACGTGAT CCTGATGGGC GAGATCCGCG ACCGCGAGAC CATGGAACAC
GCGGTGGCCT TCGCCGAGAC CGGCCACCTG TGCATGGCGA CGCTGCACGC CAACAGCGCC
AACCAGGCGC TCGACCGCAT CATCAACTTC TTCCCCGAGG AGCGGCGCGC GCAGCTGCTG
ATGGACCTGT CGCTGAACCT CAAGGCGCTC GTGTCGCAGC GCCTGCTGGC GCGCCAGGAA
GGCCGTGGCC GCGTCGCGGC GATCGAGATC CTGCTGAACA CGCCGTTGAT CTCCGACCTG
ATCTTCAAGG GCGAGGTGGC CGAGATCAAG GAAATCATGA AGAAGAGCCG CGAGCTCGGC
ATGCAGACCT TCGACCAGAG CCTGTTCGAC CTGTACGAGG GCCAGCTGGT CACCTACGAG
GATGCCCTGC GCAACGCCGA TTCGGTCAAC GACCTGCGTC TGCAGATCAA GCTCAACAGC
AACCGGGCGC GCAACTCCGA CCTGGCCTCG GGCACCGAGC ACCTGACCAT CGTCTGA
|
|---|
| Protein sequence | MERDQASKFV NDLLRLLVAR NGSDLFLTAD FPPAVKVDGR VTKVSPQPLT PQHTMALARS
IMNDKQAAEF ERTKECNFAI APTGIGRFRV NAFVQQGCVG LVLRTIPQTL PTIDSLGLPQ
VLKDVASTKR GLVIFVGATG SGKSTSLAAM VDYRNENSYG HIITIEDPVE FVHPHKNCIV
TQREVGIDTD DWAPALKNTL RQAPDVILMG EIRDRETMEH AVAFAETGHL CMATLHANSA
NQALDRIINF FPEERRAQLL MDLSLNLKAL VSQRLLARQE GRGRVAAIEI LLNTPLISDL
IFKGEVAEIK EIMKKSRELG MQTFDQSLFD LYEGQLVTYE DALRNADSVN DLRLQIKLNS
NRARNSDLAS GTEHLTIV
|
|---|
| |