| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A3709 |
|---|
| Symbol | |
|---|
| ID | 4786058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 3919608 |
|---|
| End bp | 3921170 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640092292 |
|---|
| Product | NADH dehydrogenase (quinone) |
|---|
| Protein accession | YP_001022897 |
|---|
| Protein GI | 124268893 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.801479 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCG CCATCACCGT GCGCGTCCCG CGCGATTCGG CCGCGCTCGC GGTCGGCGCC
GATGCGGTGG CCGCCACGCT GCAGGCCGAG TGCGCGCGGC GTGGCCTGGC GTTGAACCTG
GTGCGCAACG GCTCGCGCGG GCTGTTCTGG CTGGAGCCGC TGGTCGAGGT GAGCACGTCC
GCCGGCCGCG TGGCCTACGG CCCGGTGACG CCCGAGGACG TGCCGGGGCT CCTGGACGCC
GGCCTGCTGC AGGGCGCACC GCACGCACTG GGCCACGGGC CGACCGAGCA GATCCCCTAC
CTCGCGAAGC AGGAGCGCCT GTGCTTCGCC CGCATGGGCC TCACCGATCC GCTGTCGCTC
GCCGACTACG AGGCGCACGA AGGCTGGGCC GGCCTGCGCC GCGCGCTGGC AATGCCCGAC
GCGGCGGTGG TCGACGAGGT GCTGCAGTCC GGCCTGCGCG GACGCGGCGG CGCCGCTTTC
CCGACCGGCA TCAAGTGGAA GACGGTGATG AACACGCCGT CGGCGCAGAA GTACATCGTC
TGCAATGCCG ACGAGGGCGA CTCGGGCACC TATTCCGACC GCATGACGAT GGAGGGCGAT
CCGTACATGC TGATCGAGGG CATGACGATC GCCGCGCTGG CCGTCGGCGC GACCCGGGGC
TACGTCTACG TGCGCTCCGA GTACCCGCAC GCGATCGCCA CGCTGAACGA CGCGATCGCC
CGCGCCGAGG CGGCCGGCTT CCTGGGCAGC GACGTGCTGG GTTCGGGCCG CGCCTTCCAC
CTGCAGGTGC GCAAGGCCGC CGGCGCCTAC GTGTGCGGCG AGGAGACGGC GCTGCTCGAA
AGCCTGGAGG GCAAGCGCGG CATCGTGCGC GCGAAGCCGC CGCTGCCGGC CATCGAAGGC
CTGTTCGGCC AGCCCACCGT CATCAACAAC GTGATCAGCT TCGCGTCGGT GCCTCTGATC
CTGGCGCGCG GCGCGGCGCA CTACCGCGAT TACGGCGTCG GCCGCTCGAT GGGCACGCTG
CCGATCCAGC TGGCCGGCAA CGTGAAGCGC GGCGGCCTGG TCGAGAAGGC CTTCGGCGTG
ACGCTGCGCG AGCTGCTGTA CGACTTCGGC GGCGGCACCG CCTCGGGCCG GCCGATCAAG
GCAGTGCAGG TCGGCGGGCC GCTCGGCACC TATGTGCCCG AGTCGAAGTG GGACGTGCCG
CTCGACTACG AGGCCTATGC CGCCTTCGGT GGCGTGGTCG GCCACGGCGG CATCGTGGTG
CACGACGACA CGGCCGACAT GGCGAAGCTG GCGCGCTACG CGATGGAGTT CTGCGCGATC
GAGTCCTGCG GCAAGTGCAC GCCCTGCCGC ATCGGCTCGA CACGCGGCGT GGAGGTCATC
GATCGCATCA CCGCCAACGT GAACCGGCCG GCGCAGGTGA AATTGTTGCG CGACCTGTGC
GACACGATGC TCGCCGGCAG CCTGTGCGCG ATGGGCGGCA TGACGCCCTA CCCGGTGCTG
TCGGCGCTCG ACCACTACCC CGAAGACTTC GGCCTCGCGA CACCCGACCG CGCGGCCGCT
TGA
|
|---|
| Protein sequence | MSTAITVRVP RDSAALAVGA DAVAATLQAE CARRGLALNL VRNGSRGLFW LEPLVEVSTS
AGRVAYGPVT PEDVPGLLDA GLLQGAPHAL GHGPTEQIPY LAKQERLCFA RMGLTDPLSL
ADYEAHEGWA GLRRALAMPD AAVVDEVLQS GLRGRGGAAF PTGIKWKTVM NTPSAQKYIV
CNADEGDSGT YSDRMTMEGD PYMLIEGMTI AALAVGATRG YVYVRSEYPH AIATLNDAIA
RAEAAGFLGS DVLGSGRAFH LQVRKAAGAY VCGEETALLE SLEGKRGIVR AKPPLPAIEG
LFGQPTVINN VISFASVPLI LARGAAHYRD YGVGRSMGTL PIQLAGNVKR GGLVEKAFGV
TLRELLYDFG GGTASGRPIK AVQVGGPLGT YVPESKWDVP LDYEAYAAFG GVVGHGGIVV
HDDTADMAKL ARYAMEFCAI ESCGKCTPCR IGSTRGVEVI DRITANVNRP AQVKLLRDLC
DTMLAGSLCA MGGMTPYPVL SALDHYPEDF GLATPDRAAA
|
|---|
| |