| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A3516 |
|---|
| Symbol | |
|---|
| ID | 4786219 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | - |
|---|
| Start bp | 3726782 |
|---|
| End bp | 3728356 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640092097 |
|---|
| Product | phosphodiesterase/alkaline phosphatase D |
|---|
| Protein accession | YP_001022704 |
|---|
| Protein GI | 124268700 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3540] Phosphodiesterase/alkaline phosphatase D |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.195825 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGCGCC GTGATTTCCT CCATCGCCTC GGCCGCCACG CGGCCGCGCT GGCGCTCGGC
ACGCTGTTCG CGCCCGGTGT CGGCCGCAGT GGCGAGCGGG CCGAGACGCT CCGCGGTGGC
GACGACCCCT TCACGCTCGG CGTCGCCAGC GGCATGCCGG CGCCCGACGG CGTGGTGCTG
TGGACCCGGC TGGCCCCGAG GCCGCGCGAA CCGCTCGGTG GCCTGCCCGA CGCGCCCATC
GCGGTGCGCT GGGAACTGGC CGAGGACGAG GGCTTCTCGA TCGAACGGCG CACCGGCGTG
GTCTGGGCCC GGCCCGAGCA CGCGCACAGC GTTCACGCCG AGGTGACGGG GCTGCCGAGC
GATCGGCGCT ACTTCTACCG CTTCCATGCC GGCGAGGCGA CCAGCCCGCT CGGGCGCACC
CGCACCGCGC CGGCGCCCGA GGCCGGGGTC GGCCGCCTGC GCATCGCGCT GGCGTCCTGC
CAGCACTACG AGCAGGGCGA GTTCACGCTG CACCGCGAGA TCGCCGCGCG CGACCTGGAC
CTGGTGCTGT TCGTCGGCGA CTACCTCTAC GAATCCAGCA ATGCGCGCCT GCGCATCCGA
CCGCACGAAG CGGCCCAGCC GACCACGCTG GAGGGCTTCC GCCAGCGCCA CGTCACCTAC
AAGCTCGACG CCGCCCTGCG TGCGGCCCAT GCGGCCCACC CCTGGGTGCT GACCTGGGAC
GACCACGAGG TCGAGAACGA CTACGCCGCC GACGCCTCAC GGGACCCGTC GCGCAGCGCG
GCGGCGTTCC TGCAGCTGCG CGCCGCCGCC TACAAGGCCT ACTTCGAACA CATGCCGGTG
TCGCCGCACA GTGCGCCGGT GGGCGCGCAG ATGCGCATCC ACGCGCACTA CCGCTGGGGC
CGGCTGGCTG ACCTGTGGAC GCTGGACAAC CGCCAGTACC GCTCGCTGCA GCCCTGCAAT
GCGCCCGGCG TCGCCGGGGG GCGCATCCTC ACGCAGTGCG AGGCGCTCGA GGACGAGTCG
GCCACGGTGT TCGGCGCCGC GCAGGAGCAC TGGATTGGCG AGCAGCTCGC CGCCAGCCGG
CGCGGCTGGC GGCTGCTGGC CCAGGGCACG CAGATCGCGC CCAGCGGCAT CGACACGCCG
CTCGGCCGCA GCCTCTTCAG CGACGGCTGG GACGGCTACC CGAAGGCGCG CGCGCGCCTG
ATGCGGGCGA TCGCGGGGCA GCCGCAGGGC AACGTGGTCT GCCTCGGCGG CGACGTGCAC
CGCCACGTGG CCGCGCGCTT GCGCGCCGAC ATCGGCGACC CGCGCTCGCC GATCGTCGCC
AGCGAGTTCG CCACCAGCTC GCTCACGTCG CGCGGGCTGT CCGACACCGC GACCGCGCTG
ATGCGCAGCA GCAATCCCGA CCTGCTGCAT GCGCGCAGCG ACGAGCGCGG CTACGTGTTG
CTCGACCTCA CGCCGCAGCG TCTGCACGCC GAGCTGCGCG CCACCGCCTT CCCGGTGGTG
GCCGATGCGC GAGTCCACAC CCAGGCCGCC TTCGTCGTCG AGGCGGGCCG CGCCGGACCG
CAACGCGACG CCTGA
|
|---|
| Protein sequence | MWRRDFLHRL GRHAAALALG TLFAPGVGRS GERAETLRGG DDPFTLGVAS GMPAPDGVVL
WTRLAPRPRE PLGGLPDAPI AVRWELAEDE GFSIERRTGV VWARPEHAHS VHAEVTGLPS
DRRYFYRFHA GEATSPLGRT RTAPAPEAGV GRLRIALASC QHYEQGEFTL HREIAARDLD
LVLFVGDYLY ESSNARLRIR PHEAAQPTTL EGFRQRHVTY KLDAALRAAH AAHPWVLTWD
DHEVENDYAA DASRDPSRSA AAFLQLRAAA YKAYFEHMPV SPHSAPVGAQ MRIHAHYRWG
RLADLWTLDN RQYRSLQPCN APGVAGGRIL TQCEALEDES ATVFGAAQEH WIGEQLAASR
RGWRLLAQGT QIAPSGIDTP LGRSLFSDGW DGYPKARARL MRAIAGQPQG NVVCLGGDVH
RHVAARLRAD IGDPRSPIVA SEFATSSLTS RGLSDTATAL MRSSNPDLLH ARSDERGYVL
LDLTPQRLHA ELRATAFPVV ADARVHTQAA FVVEAGRAGP QRDA
|
|---|
| |