| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A3404 |
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| Symbol | fimT |
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| ID | 4786334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008825 |
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| Strand | + |
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| Start bp | 3620041 |
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| End bp | 3620640 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640091980 |
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| Product | fimbrial biogenesis protein |
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| Protein accession | YP_001022592 |
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| Protein GI | 124268588 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0205912 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCGACCC CATGGTCGCG ACCCCGCTGC GGCCTCCGCG GCTTCACTAT CATCGAGCTG
ATGGTCACGA TCACGCTGCT GGCCATTCTG CTGGGCTTGG CGGTGCCTTC GTTCGCACTG
TGGATCAACA ACAGCCGCGT TCGCACCACC GCCCAGGTGC TGCAGGACGG GCTGCGGCTC
GCGCAGGCCG AAGCCGTGCG GCGCAATCGC ACCGTGAGCT TCTTCCTGAC AACCGCCGCC
AACCCCGACG CCGACTCCAC CGCGAATGCC AACGGCGGGA ACTGGGGCGT CCGCGTTCTG
CCTCTCACGG GCACGACCCG CGAGTTCGTC CGCGGCGGCG CGCTGGCTGG CGTGAACAAC
GGCGTCACGA TCACCAGCGC GAGCACGCTC GTGTGCTTCA ACGCAGCGGG TCAGCAGGTT
GCGAATGGCA CTGAAGGCTG TGCTATCGAC GCGGGCAACC CGAATGCCAT CTATGACGTG
GCGCACGCTG GCAGCGACCG TCCGCTGCGT GTGATCGCGT CGCTGGGCGG TCGCGTGCGC
ATGTGCGATC CGGCCAAGAC TCTGTCCGCC GCCAACCCCG ATGGGTGTCC TCCGTTATGA
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| Protein sequence | MSTPWSRPRC GLRGFTIIEL MVTITLLAIL LGLAVPSFAL WINNSRVRTT AQVLQDGLRL
AQAEAVRRNR TVSFFLTTAA NPDADSTANA NGGNWGVRVL PLTGTTREFV RGGALAGVNN
GVTITSASTL VCFNAAGQQV ANGTEGCAID AGNPNAIYDV AHAGSDRPLR VIASLGGRVR
MCDPAKTLSA ANPDGCPPL
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