Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpe_A3136 |
Symbol | gspD |
ID | 4786649 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylibium petroleiphilum PM1 |
Kingdom | Bacteria |
Replicon accession | NC_008825 |
Strand | + |
Start bp | 3334966 |
End bp | 3337176 |
Gene Length | 2211 bp |
Protein Length | 736 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640091707 |
Product | general secretion pathway protein D |
Protein accession | YP_001022324 |
Protein GI | 124268320 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.81817 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.003504 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATCATGA GCCTGACCAC TTCACCGAAG CCCGCCCGCC GCGCCACGGC GCTGCGCGCG CTGGCTGCGG CCTGTGCGGT CAGCGTCGCG CTCGGCAGCC TCGCGCCGCC GGCCCTGGCG CAGAAGACCA AGACGCGCGA GCCGGTGACG CTGAACTTCG TCAACGCCGA GATCGAGGGC GTGGCGCGGG CCATCGGCGC CATCCTGGAG CGGCAGATCG TGATCGATCC GCGCGTGAAG GGCCAGATCA CGCTGTACAG CGAGCAGCCC CTGTCGCCGC GCGAGGCCTA CCTGAACTTC CTGGCTGCGC TGCGCGGCCT GGGCTTCACG GTGGTCGAGG TCGCCGGCCT GCTGAAGGTG GTGCCCGAGG CGGATGCCAA GCTGCAGACC GGCACCGTGT CGGTCGGCAA CGTCACGCGC CAGGGCGATC AGATCATCAC GCAGATCTTC CGGCTGAACC ACGAGAACGC GAACAACCTG GTGGCCGTGC TGCGTCCGCT GATCAGCCCG AACAACACCA TCAACGCCAA TCCCGGCAAC AACTCGCTGG TGATCACCGA CTACGCCGAC AACCTGCAGC GCATCGCCAA GGTGATCGCG ACGGTGGACG TGCCGGCGGG GACCGATGTC GAGGTGATCC CGCTGCAGCA TGCGGTCGCC TCCGACATCG CGGTGCTGGT GCAGCGCCTG TCGGACGCGT CAGCGGCAAC GGCGGGCGCC CCGGCGACCG CGGCTAGCGG CGGCGCTCTG TCGGTGATCG CCGACGCCCG CACCAACTCG CTGCTGGTGC GCGCCGCCAA CCCGGCCAAG CTGGCCCAGG TGCGCTCGCT GGTCGGCAAG CTCGACCAGC CCGGCGCCGC AGGCGCCGGC GGCAGCAACA TCTACGTGGT CTACCTGAAG AACGCCGATG CGACGCGTCT GGCCCAAGTG CTGCGCGCGG CCTTCACCAG CAATACCAGC AGCAGCAGCA GCGGCTCGGT CGGCGGCGCG GCGAGTCCGG TCACGAACCT GTCCAACCAG GCGAATGCCC AGCTCGGCAA CCAGACCTCG GGCACGGGTG CTGCACCGCA GACGACCAAC CCCGTCAGCG GCGCTGCCCA ACCGTCGACC GGCGGCTTCA TCCAGGCCGA TCCGGCCACC AATGCGCTGA TCATCACCGC GGCCGAGCCG CTGTACCGCC AGCTGCGCTC GGTGATCGAC CAGCTCGATG CGCGCCGCGC CCAGGTCTAC GTCGAGACGA TGCTGGTGGA GGTCAACGCC ACCAAGGCGG CAGACGCCGG CATCCAGTGG CAAGGCCTGA TCGGCAAGGA CGGCGACAAG ACCGGCCTGA TCGGTGGCAC CAATTTCGGG ACCGGCGGGG ACAACATCAT CAACCTGTCG ATCGCCGCGG CCCAGGGCGG CACCGCCGTC AGCGGCAACC TGCCCTCGGC GGGTCTGAAT CTCGGCGTCA TCCGCCGCTT CGCGGGTGTC TACACGCTGG GTGCGCTGGC GCGCTTCCTG GAGACCAACG CCGACGGCAA CATCCTCTCG ACGCCGAACC TCGTCACGCT GGACAACGAG GAAGCCAAGA TCGTCGTCGG CCAGAACGTG CCTTTCGTCA CCGGCTCGTT CACGAGCACG GGGACCGGCA GCGGTGCGAC CAATCCGTTC CAGACCATCG AACGCAGGGA TGTCGGCATC ACGCTGCGCG TGAAGCCCCA GATCGGCGAG AACGGCACCG TGCGCATGAC GATCTACCAG GAAGCGTCGA GCGTCGTGAA TCAGAACGTC TCGCAAGGCG TGGCCGACGC CACCGCGGGG CTGGTGACCA ACAAGCGCTC GATCGAGTCG ACGGTGGTGG TGAACGACGG CGACATCCTG GTCATGGGCG GCCTGATGCA GGACCAGTTC CAGGACAACT CCAGCCGCGT GCCGGGCCTG GGCCGGCTGC CCGGCATCGG CGCGCTGTTT CGCAGCGACA ACCGCACCCG CACGAAGAGC AACCTGATGG TCTTCCTTCG CCCGCAGGTG ATGCGCAGCG CCGAGAGCAG CAATGCGCTG TCGCTCGACC GCTACGATCT GATCCGGGCC CAGCAGCAGA ACAGCCAGCC CGAATCGCGC GTGCTGCTGC CGAACTTCGA CACGCCGGTG CTGCCACCGC TGCGTCCGCC GCCGGGTGAG CCGATGCAAC CCGCGCCCAC GCCGCCGGCC TCGCCGCCGC TGCAGAACTG A
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Protein sequence | MIMSLTTSPK PARRATALRA LAAACAVSVA LGSLAPPALA QKTKTREPVT LNFVNAEIEG VARAIGAILE RQIVIDPRVK GQITLYSEQP LSPREAYLNF LAALRGLGFT VVEVAGLLKV VPEADAKLQT GTVSVGNVTR QGDQIITQIF RLNHENANNL VAVLRPLISP NNTINANPGN NSLVITDYAD NLQRIAKVIA TVDVPAGTDV EVIPLQHAVA SDIAVLVQRL SDASAATAGA PATAASGGAL SVIADARTNS LLVRAANPAK LAQVRSLVGK LDQPGAAGAG GSNIYVVYLK NADATRLAQV LRAAFTSNTS SSSSGSVGGA ASPVTNLSNQ ANAQLGNQTS GTGAAPQTTN PVSGAAQPST GGFIQADPAT NALIITAAEP LYRQLRSVID QLDARRAQVY VETMLVEVNA TKAADAGIQW QGLIGKDGDK TGLIGGTNFG TGGDNIINLS IAAAQGGTAV SGNLPSAGLN LGVIRRFAGV YTLGALARFL ETNADGNILS TPNLVTLDNE EAKIVVGQNV PFVTGSFTST GTGSGATNPF QTIERRDVGI TLRVKPQIGE NGTVRMTIYQ EASSVVNQNV SQGVADATAG LVTNKRSIES TVVVNDGDIL VMGGLMQDQF QDNSSRVPGL GRLPGIGALF RSDNRTRTKS NLMVFLRPQV MRSAESSNAL SLDRYDLIRA QQQNSQPESR VLLPNFDTPV LPPLRPPPGE PMQPAPTPPA SPPLQN
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