| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A3117 |
|---|
| Symbol | nikE |
|---|
| ID | 4786630 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | - |
|---|
| Start bp | 3318181 |
|---|
| End bp | 3319176 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640091688 |
|---|
| Product | ABC type ATPase |
|---|
| Protein accession | YP_001022305 |
|---|
| Protein GI | 124268301 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0682716 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAC CGGGCGAGGC ATTGCCGCTG GTCGAGGCGC GTGACCTGGT CAAGCACTTC
GACGTCTCCC CTCCGTGGGT CGAGCGTGTG CTGCAGCGCC GCCCGCGACA GACCGTCCAG
GCCGTCGACG GCGTGAACTT CGTGATCGAG CGTGGCCAGA CGCTGGCGTT GGTCGGCGAA
TCGGGCTGCG GCAAGAGCAC GGTGGCGCGG CTGCTGGTCG GCCTGCACCG GCCCAGTAGT
GGGTCGGTGC AGTTCGGCGG CGAAGACCTG TCGCGCGTGC TGGCCGGGCC ACAGCGCCGC
CTGCAGATGA TCTTCCAGGA CCCCTACGCC AGTCTCAACC CGCGCTGGAG CGTGCAGTCC
ATCGTGGCCG AGCCGCTGAT CGAGCAGGGC GTGGAACGCC GGCCCGCGGC TCTGCGCGAG
CGCGTGGGTG TGCTGCTCGC GTCGGTGGGG CTGGCCGCAG CAGACGCCGG CAAGTTCCCG
CACCAGTTCT CGGGCGGTCA GCGCCAGCGC ATCTCGATCG CGCGGGCACT GGCCACGTCG
CCGGACTTCC TGGTGTGCGA CGAGCCGACT TCGGCGCTCG ACGTATCGGT GCAGGCCCAA
GTGCTCAATC TGATGAAGGA CCTGCAGCGC GAGCGCGGTC TGACCTACCT GTTCATCTCG
CACAACCTCG CGGTCGTGCG ACACGTTGCC GATCAGGTCG GTGTCATGTA CCTCGGCCGG
CTGGTCGAAC TGGCGCCGAA GCGCACGTTG TTCGGTCGGC CCCGGCATCC GTACACGCGC
ATGCTGCTCG ATGCGGTGCC CGATCTGCAG ATGAGCGGGC GGCCGCGCAT ACCGGTCCAG
GGTGAAGTGC CCAACCCCTT GCAGCCACCC AGCGGCTGCA GTTTCCATCC GCGCTGCCCG
CATGCCGACG AGCGTTGCCG GCGCGAGCGG CCGGCCTGGC ACGCGATCGA CGGCATCCGC
GTGGCCTGCC ACGCCGTGAG CGAAGGGCGG CTTTGA
|
|---|
| Protein sequence | MSAPGEALPL VEARDLVKHF DVSPPWVERV LQRRPRQTVQ AVDGVNFVIE RGQTLALVGE
SGCGKSTVAR LLVGLHRPSS GSVQFGGEDL SRVLAGPQRR LQMIFQDPYA SLNPRWSVQS
IVAEPLIEQG VERRPAALRE RVGVLLASVG LAAADAGKFP HQFSGGQRQR ISIARALATS
PDFLVCDEPT SALDVSVQAQ VLNLMKDLQR ERGLTYLFIS HNLAVVRHVA DQVGVMYLGR
LVELAPKRTL FGRPRHPYTR MLLDAVPDLQ MSGRPRIPVQ GEVPNPLQPP SGCSFHPRCP
HADERCRRER PAWHAIDGIR VACHAVSEGR L
|
|---|
| |