| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A2408 |
|---|
| Symbol | |
|---|
| ID | 4784304 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | - |
|---|
| Start bp | 2571922 |
|---|
| End bp | 2573775 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640090978 |
|---|
| Product | integrase (int) |
|---|
| Protein accession | YP_001021598 |
|---|
| Protein GI | 124267594 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.71715 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTCT CAGACTTGGC CGTTCGACAG GCCAAGGCAA CTGGCAAGGC ATACACCCTC
CCTGACTTGG ATGGCCTCTC CCTGGCCGTC ACGGCTGCAG GGGGCAGGAC TTGGCACTTC
CGCTACTACT GGGCGGGCAA GCAGAAGCGG ATGTCGCTCG GCACCTACCC GGAGGTGACG
CTTCGCGAGG CCCGCAGCCT GCGCGATGAA GCGCGCGCCC TGCTAGCCAA AGGCATCAAT
CCTCGCGTTC ACCGCAAGCA GAAGCGCACT GCCGTCCGGC TCGCCGACGA GAACACCTTC
GAGGCGGTGT ATCGCAAGTG GCTCAAGCAT CGCGGGCTCA GCCTCAAGGA AGGCCGGCAG
ACGACCCTCT CGATACTTCC ACGGATCTTC GACAAGGATG TGTTGCCCAC CTTGGGCAAG
CGGTCGGTCT ATGAGATCAA GCGTCCCGAC CTCTTGGAGG TGATCGCCAA GATCGAGAAG
CGCAGGGCAC TCTCCGTCGC CGAGAAAGTC AGGACGTGGT TCAACCAACT GTTTCGCTAC
GCGCTGGTGA TCGTGCCGGG CCTGGAGCAA AACCCCGCCT CCGATCTCGA TGTGGTGGCG
CTGCCGCTGC CACCCGTCAA CCACAACCCG TTCCTGCGCA TGGCCGAGCT GCCGAAGCTG
TTGCAGCGGC TGCGCAGCTA TCGCGGCAGG CGGCAGACCC AGCTCGGGCT GCGGCTATTG
CTGCTGACCG GCGTGCGAAC CGGCGAGCTG CGACAGGCGA CGCCGGATCA ATTCGATCTG
GACCGTGGGT TGTGGATCAT CCCGCCCGAC GTCGTGAAGC AACTCCAGTT GGATATGCGC
AAGAAGCGGC AGCAGCCAAA GGACATCCCG CCCTACATCG TGCCGCTGTC GATTCAGGCC
ATGGAGATCG TCCGGCACCT GCTGGATGAG TTCAAGCCGG CCCAGCGCCA CCTGTTCCGG
CACGACAGCG ACTTGAAGAA GCGCATCAGC GAGAACACGC TCAATGGTGC GCTCAAACGC
ATGGGCTATC AGGAACGCCT GACGGGACAC GGTATCCGCG GCACGATGTC CACTGCGCTC
AACGAGATCG GCTACCCGAA GGTCTGGGTG GATGCACAGC TCTCGCATGT CGATCCCAAC
AAGGTCAGCG CGACCTACAA CCATGCCGAG TACGTGGAAC AGCGTCGCCG CATGATGCAG
GACTGGGCCG ATCGGCTCGA CCTCTTCGAG CAGAACCAGG TCGAGGCGGC CAGCATGCCG
CTCACCGTGC ATCTGGAAGG CGTGCCCGCG TTCCCGAATG AGCAAACCGC AAGCGCACCC
TCCACGCCGG TTGCCGCTTC GCCAATCCTG CTCGTGACGA AGCCCGGCGA CGCCATGCCG
TTGGTTTCTG CCGCCGCACA CCGGCTGCCG GCGGTTCCGC CCCCTCGGTC GGCCGCGCCG
CTGGTGCCTT CGGACATTCA GCGCGAGAGG ATGGAACTGT TCGATGTCTT CGAAGCGCCG
CACAACCTTC CCGTCGCGGC GTTTGCGAAG ATGGCGGGCA AGTCCCGCAG GTGGATCAGC
TACGAGATCA AGGCCGGCAA CTTGCTGGCG TTGAACGTGG GCAACCGCGG CCAGCGGGTG
CCGGACTGGC ACCTCGACCC ACTCAAGCAC GAGCTGATCC AGTCCGTCCT CAAGCTGACC
AGGGGTGCGG ACCCTTGGCA GATCTACCAT GCACTGCTGC AACCGCGCTC GATGCTGCGG
GGGCATTCGG CACTGGAGGG CGTGACGGCC GGCAATCTCG ACAAGCTCGT CATGGCAGTG
AGCACAGCCG TGAAGGAAAG CGAATGGACC CCGCCGCGAG TCGGAGTCGC CTAG
|
|---|
| Protein sequence | MALSDLAVRQ AKATGKAYTL PDLDGLSLAV TAAGGRTWHF RYYWAGKQKR MSLGTYPEVT
LREARSLRDE ARALLAKGIN PRVHRKQKRT AVRLADENTF EAVYRKWLKH RGLSLKEGRQ
TTLSILPRIF DKDVLPTLGK RSVYEIKRPD LLEVIAKIEK RRALSVAEKV RTWFNQLFRY
ALVIVPGLEQ NPASDLDVVA LPLPPVNHNP FLRMAELPKL LQRLRSYRGR RQTQLGLRLL
LLTGVRTGEL RQATPDQFDL DRGLWIIPPD VVKQLQLDMR KKRQQPKDIP PYIVPLSIQA
MEIVRHLLDE FKPAQRHLFR HDSDLKKRIS ENTLNGALKR MGYQERLTGH GIRGTMSTAL
NEIGYPKVWV DAQLSHVDPN KVSATYNHAE YVEQRRRMMQ DWADRLDLFE QNQVEAASMP
LTVHLEGVPA FPNEQTASAP STPVAASPIL LVTKPGDAMP LVSAAAHRLP AVPPPRSAAP
LVPSDIQRER MELFDVFEAP HNLPVAAFAK MAGKSRRWIS YEIKAGNLLA LNVGNRGQRV
PDWHLDPLKH ELIQSVLKLT RGADPWQIYH ALLQPRSMLR GHSALEGVTA GNLDKLVMAV
STAVKESEWT PPRVGVA
|
|---|
| |