| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A2358 |
|---|
| Symbol | czcA |
|---|
| ID | 4784578 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 2525380 |
|---|
| End bp | 2528565 |
|---|
| Gene Length | 3186 bp |
|---|
| Protein Length | 1061 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640090926 |
|---|
| Product | RND OM permease |
|---|
| Protein accession | YP_001021548 |
|---|
| Protein GI | 124267544 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.650016 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCTCG AACGCCTCAT CCGCTTCTCG ATCCGACATC GCTGGTTGAT GCTGGTGCTC
ACCGGTGCGC TCGTCGCGCT GGGCGTGTGG AGCTACCGGC ACCTGCCGAT CGACGCCACG
CCCGACATCA CCAATATCCA GGTCCAGATC AACACGCAGG CCCCGGGCTA TTCGCCGCTG
GAGGCCGAGC AACGGGTGAC TTTCCCGATC GAGACCGCGA TGTCGGGCCT GCCGCGGCTG
GACTACACGC GCTCGCTCTC GCGGTATGGC CTGTCGCAGG TCACGGTCGT GTTCGAGGAT
GGCACCGACC TGTATTTCGC GCGGCAACAG GTCGCCGAAC GCCTGCAGCA GATTGCCTCG
CAATTGCCCG AAGGCCTCGA TCCCGAACTG GGACCGATCT CGACCGGACT GGGCGAGATC
TTCATGTACA CGGTGGAAGC CAAACCGGGT GCGCGCAAAC CCGATGGCGG CCCGTACACC
GCCACGGACC TGCGCACCCT GCAGGACTGG GTGATCCGTC CGCAGCTGCG CAACACGCCG
GGCGTGACCG AGGTCAACAG CATCGGCGGC TATGAACGGC AGATCCACAT CACGCCCGAT
CCTGCGCGGC TGGTTGCGCT CGGGCTGACT TTGCGCGACG TGCTCGCCGC GATCGCCCGC
AACAACCAGA ACCTGGGCGC CGGCTACATC GAGCGCAACG GGCAACAGTT CCTGGTGCGC
GTCCCGGGGC AACTGGTGGG CCTGGACGCG ATCGGCAACA TCGTCCTGGA CCGGCGCGAA
GGCGTGCCGA TCCGGGTGCG CGATGTCGCC ACCGTGGGCG AAGGCAAGGA ACTGCGCACC
GGCGCGGCGA CGCAGAACGG CCACGAGGTC GTGGTCGGCA CGACCTTCAT GCTGTTCGGG
GCGAACAGTC GCGAAGTTTC GCGCGCCGCC GCCGCAAAGC TGGAGGCCGC CAACGCGAGT
CTGCCCGAGG GCGTGCACGC CCAGCCGGTG TACGACCGCA CCGTGCTGGT CGACCGCACG
ATCCACACCG TGGCCAAGAA CCTGATCGAA GGCGCACTGC TGGTGATCGT GGTGCTGTTC
CTGTTGCTGG GCAACGTGCG CGCCTCGCTG GTTACCGCCG CGGTGATCCC GTTGGCGATG
CTGTTCACCA TCATCGGCAT GGTGCGCGGT GGGGTGTCGG GCAACCTGAT GAGCCTGGGC
GCGCTCGACT TCGGCCTGAT CGTCGACGGC GCGGTGATCA TCATCGAGAA CTGCCTGCGC
CGTTTTGGCG ATGCGCAACA TCGGCTCGGA CGCGTGCTCA GCGAGGAAGA ACGTTTCGAC
CTCACCGCCA GTGCCACCGC CGAGGTCATT CGCCCGAGCC TGTTCGGCCT GGGCATCATC
ACCGCGGTCT ACCTGCCGAT CTTCGCCCTG ACCGGGGTCG AAGGAAAAAT GTTCCATCCG
ATGGCGATCA CCGTGGTGCT GGCGTTGACC GGCGCAATGG TGCTGTCGCT CACCTTCGTG
CCGGCGGCCA TCGCGGTGTT CCTGCGCGGC CGCGTCGCCG AACACGACAA CCGGCTGATG
GCGTGGGCGC GGGCGCGCTA TGCCCCGATG CTCGCCTGGG CCTTGCGTCG ACGCATCGCG
GTGCTGGTTG GTGCCGGCGT GCTGGTGCTG GTCAGTGGCG TGCTGGCCAC GCGTCTGGGC
GCGGAATTCG TGCCGAGCTT GGACGAAGGC GACATTACCT TGCAGCCGAT GCGCATCCCG
GGCACCGGGC TGGAGCAGTC GGTCACGATG CAAAAGACGC TGGAACTGCG GATGAAGCAA
TTCCCCGAAG TGGCCAACGT GTTCTCCAAG ATCGGCACGG CCGAAGTCGC CACCGATCCG
ATGCCACCGT CGATGGCCGA TACCTTCCTG ATGCTCAAGC CGCGCGAGCA ATGGCCCGAC
CCGCGCAAGC CCAAGGGCGA GCTGATCGAG GAACTGGAAG CCGCCGCCCG CGAAATTCCC
GGCAGCAACT ACGAGTTCAC CCAGCCCATC CAGATGCGCA CCAACGAGCT GATCTCGGGC
GTGCGGTCGG ACGTGGCCGT AAAGGTCTAT GGCGACGATC TGGCGCAGCT GGCGCGACTG
GCCAGCCGCG TCGAACGGGT GATGCGCAAG GTGCCGGGCG CGGAGGACGT CAAATCCGAA
CAGGTGACGG GCCTGCCGCT CCTGACGGTC ACGCCGGATC CGGCCGCGCT GGCGCTGTAC
GGGCTCAATC CCGGCGATGT TCAGGAAACG GTCGCCACGG CGGTCGGTGG TTCCGTCGCC
GGGCAACTGT TCGAAGGCGA TCGCCGCTTC GACCTCGTCG TGCGCTTGCC GGAAGCCTTG
CGCCAGGATC CCGCGGCGCT GGCCGACCTG CCCATTCCGT TGCCGGACGG AGCGCAGCCC
GACGAATCGA GCCATGAGGC GTCGTGGGCC GCCGGCGCCC CGCGCACGGT GCCGCTGCGC
GAAGTGGCAC GCATCGAGGT GCAACGCGGT CCCAACCAGA TCAACCGCGA GAACGGCAAG
CGGCGGGTGG TCATCACCGC CAACGTGCGC GAGCGCGACT TGGGTAGCTT CGTCGGCGAG
CTGCGCACGC GCATCAACCG CGACGTGCGA TTGCCGGAAG GCTACTGGGT CGATTACGGC
GGCACTTTCG AGCAGCTGAT CTCCGCCAGC CAGCGCCTGG CCATCGTCGT GCCCGTGACC
CTCGCGCTCA TCTTCGCGCT GCTGTTCATG GCCTTCGGTT CGGCGAAGGA TGCGGCGATT
GTGTTCAGTG GCGTGCCGCT AGCCCTCACT GGCGGAATCA TTGCCCTTGT GCTGCGCGGC
ATTCCTCTGT CGATCTCCGC CGGCGTGGGC TTCATCGCGC TGTCTGGTGT CGCGGTACTC
AACGGCCTGG TGATGATCGC CTTCATCCGG AAGTTGCGCG AACAAGGCGA TCCGTTGGAC
AGCGCGATCG TAGATGGCGC CCTGGGTCGC TTGCGCCCGG TGATGATGAC CGCGCTGGTC
GCGTCGCTGG GATTCCTGCC AATGGCGCTG AATGTCGGTG CGGGCTCGGA AGTGCAGCGG
CCGCTGGCGA CCGTGGTGAT CGGCGGGATC GTCTCCTCAA CACTGCTGAC CCTGCTGGTA
CTGCCAGCGC TGTACCGGTG GTGGCATCGG GATACCGAGA CCACCGAAGA GCTGCTGCAT
GGTTGA
|
|---|
| Protein sequence | MMLERLIRFS IRHRWLMLVL TGALVALGVW SYRHLPIDAT PDITNIQVQI NTQAPGYSPL
EAEQRVTFPI ETAMSGLPRL DYTRSLSRYG LSQVTVVFED GTDLYFARQQ VAERLQQIAS
QLPEGLDPEL GPISTGLGEI FMYTVEAKPG ARKPDGGPYT ATDLRTLQDW VIRPQLRNTP
GVTEVNSIGG YERQIHITPD PARLVALGLT LRDVLAAIAR NNQNLGAGYI ERNGQQFLVR
VPGQLVGLDA IGNIVLDRRE GVPIRVRDVA TVGEGKELRT GAATQNGHEV VVGTTFMLFG
ANSREVSRAA AAKLEAANAS LPEGVHAQPV YDRTVLVDRT IHTVAKNLIE GALLVIVVLF
LLLGNVRASL VTAAVIPLAM LFTIIGMVRG GVSGNLMSLG ALDFGLIVDG AVIIIENCLR
RFGDAQHRLG RVLSEEERFD LTASATAEVI RPSLFGLGII TAVYLPIFAL TGVEGKMFHP
MAITVVLALT GAMVLSLTFV PAAIAVFLRG RVAEHDNRLM AWARARYAPM LAWALRRRIA
VLVGAGVLVL VSGVLATRLG AEFVPSLDEG DITLQPMRIP GTGLEQSVTM QKTLELRMKQ
FPEVANVFSK IGTAEVATDP MPPSMADTFL MLKPREQWPD PRKPKGELIE ELEAAAREIP
GSNYEFTQPI QMRTNELISG VRSDVAVKVY GDDLAQLARL ASRVERVMRK VPGAEDVKSE
QVTGLPLLTV TPDPAALALY GLNPGDVQET VATAVGGSVA GQLFEGDRRF DLVVRLPEAL
RQDPAALADL PIPLPDGAQP DESSHEASWA AGAPRTVPLR EVARIEVQRG PNQINRENGK
RRVVITANVR ERDLGSFVGE LRTRINRDVR LPEGYWVDYG GTFEQLISAS QRLAIVVPVT
LALIFALLFM AFGSAKDAAI VFSGVPLALT GGIIALVLRG IPLSISAGVG FIALSGVAVL
NGLVMIAFIR KLREQGDPLD SAIVDGALGR LRPVMMTALV ASLGFLPMAL NVGAGSEVQR
PLATVVIGGI VSSTLLTLLV LPALYRWWHR DTETTEELLH G
|
|---|
| |