| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A2213 |
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| Symbol | |
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| ID | 4784818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008825 |
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| Strand | + |
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| Start bp | 2364808 |
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| End bp | 2366733 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640090781 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_001021404 |
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| Protein GI | 124267400 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.658691 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.864608 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTACC GAAATCGCCG TGTCGCGGAC CGTCCCCAGC GGATGTGTCC CGACGCGATT
TCAATGACCG AAAACTCCTC CGCCCGCTCA CCCCTCACGT CGTCGGTCAC GCTCCACAGC
GCGCTGCTGG CGGCGGCCGT GCTGTTGCTC GCCGTGCTCG GCGTCGTGAC ACAGCTGAGT
CTCGACACCG CCCGCCGCAA CGAGGTGCAG CGCGCACTGC GCGATACCGA ACGCAACACG
CAGAAGCTGG CCGTGCGCGT CGGCGAAGTG CTCGACCGTG TCGACCAGAC CACGCTGCTG
GTCAAGTCGC TGCACGAGAC CGGCAACCCG ACGAGCCTGT CCGGGCTGCG CGCCGCCGGA
CTCGTGACGC TGGACACGAC CCGCGCCCTG CTCATCACCG ATCGACATGG CGTCGTGCAG
GAAAGCACCT CGCCCGACGT TGCGCTGAAC GTCGCCGACG AAGACGATTT CAAGCGTCAC
CTCCACGATC CCGTCCTCGG TCTGAGCATC GGCGCGCCTC AGCCCGATCA TCTGAATGGC
GGTTGGATGC TGCCGGTGAT GCGCCGCCTG ACCCACGACG GCCAGTTCGA CGGCGTCGTC
GTCGCGATGC TCGATCCCGG CTCTCTGACC AAGGGCTTCG ATCATGGCGA GGCGCCGGGC
ACCGTGATCA CGGTGATCGG CCTCGACAAC ATCAACCGCT CACGGCGTCT GGACGGCAGC
ATCAGTTTCG GCGAGAAGGT CGACGCCCAG AAGGTGCTGC AGCGCTCGCG CGAGATCCGC
GAGACGCTCC AGCCCTTCTA CAGCCAGGTC GACGGCACGG CCCGCTTCTT CACGGCGCTG
CCGATCGATC GCTATCCGAT GGTCGCCGTC GTGGCCGTCT CGGCCGACGC CGTGACAGCC
GGCTATCAGC AGACGCGGCT TCGTCTCCTC GGCTGGTCCG CGGCCGTCGC ACTGCTGATC
GTGTTCGGAA CGCTGGTGCT GTGGCGGCAG GCCCGCGGGC TCGACAGCAG TCGGCGCGAG
GCCCGTCGGG CCAAGGCGCT CTACGTCGCC ACACTCGACG GCAGCCTGGA TGCACTGTGG
CTGATGCGTG CCGAGCGGGA TGCGTCGGGG CAGACACACG ATTTCGTGAT CACCGACGCC
AACCGCCGTG CGGGCGCCAT GCTCGGGCTG GACCCCGCTG CGATGATCGG GCGTCGCGCG
ACCGAGTTGG TGCCGTCGAT CCGCGAAGAT GGCCTGCTGA ACCTGCTGCT CACGGTGCTG
CAACGGCAGA AGCCGATGGA TGTCGAGGCC CAGGCCGTCG CGACCTCGAT GCGCGGACGC
TGGATGCACT TCCAGGTCGT CCCGGTCGAG GAGGGCGTGG CGCTGATCAC GCGCGACATC
GACGACCGCA AGCGCGCCGA AGCACAGCTC GCCGACATTG CACGCCGGGA TGCCTTGACG
CAGTTGCCGA ACCGCCGTCA TTTCGAGGAA CAGCTCGAAC TGGCCGCTGC CCGCGCTCAA
CGCAGTGGTC GGCCGATGGC CCTCGTCTAC CTCGATCTCG ACGGCTTCAA GCGCGTCAAC
GACACGCTCG GTCACGAAGC GGGGGATCGG TTGCTGATCT CGGTCGCGCT GCGCCTGACA
GCCTGCGTGC GTGTGACCGA TCTGGTCAGC CGGCTCGGGG GTGACGAGTT CACCGTGATC
CTGGAAGAGT CGGGAACGGC CGAGGATCGT CTTCAGCTGT GCGAGCGCAT CCTCGCCCAG
CTGTCCGAAC CACACGTGTT GGCCGGCCAG GCAACCGTGT CGACGCCGAG CCTGGGCATG
GCCGTCTACC TGCCGGGTGA ATCGCTCGAC AGCCTGCGCA AGCGTGCCGA CGGCGCGATG
TACGACGCCA AGCGGGCCGG CAAGGCCTGC CTGCGGATCG CGGCCTCTGC CAGCACGGCG
AGTTGA
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| Protein sequence | MRYRNRRVAD RPQRMCPDAI SMTENSSARS PLTSSVTLHS ALLAAAVLLL AVLGVVTQLS
LDTARRNEVQ RALRDTERNT QKLAVRVGEV LDRVDQTTLL VKSLHETGNP TSLSGLRAAG
LVTLDTTRAL LITDRHGVVQ ESTSPDVALN VADEDDFKRH LHDPVLGLSI GAPQPDHLNG
GWMLPVMRRL THDGQFDGVV VAMLDPGSLT KGFDHGEAPG TVITVIGLDN INRSRRLDGS
ISFGEKVDAQ KVLQRSREIR ETLQPFYSQV DGTARFFTAL PIDRYPMVAV VAVSADAVTA
GYQQTRLRLL GWSAAVALLI VFGTLVLWRQ ARGLDSSRRE ARRAKALYVA TLDGSLDALW
LMRAERDASG QTHDFVITDA NRRAGAMLGL DPAAMIGRRA TELVPSIRED GLLNLLLTVL
QRQKPMDVEA QAVATSMRGR WMHFQVVPVE EGVALITRDI DDRKRAEAQL ADIARRDALT
QLPNRRHFEE QLELAAARAQ RSGRPMALVY LDLDGFKRVN DTLGHEAGDR LLISVALRLT
ACVRVTDLVS RLGGDEFTVI LEESGTAEDR LQLCERILAQ LSEPHVLAGQ ATVSTPSLGM
AVYLPGESLD SLRKRADGAM YDAKRAGKAC LRIAASASTA S
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