Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpe_A1925 |
Symbol | |
ID | 4786686 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylibium petroleiphilum PM1 |
Kingdom | Bacteria |
Replicon accession | NC_008825 |
Strand | - |
Start bp | 2064818 |
End bp | 2067079 |
Gene Length | 2262 bp |
Protein Length | 753 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640090495 |
Product | ornithine decarboxylase |
Protein accession | YP_001021118 |
Protein GI | 124267114 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00506888 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCAGCACT TTCGTTTCCC CATCGTCATC ATCGACGAGG ACTTTCGCTC CGAGAACACC TCCGGACTGG GCATCCGTGC GCTGGCGGAC GCGATCGTCA AGGAAGGCTT CGAGATCCTG GGCGTCACCA GCTACGGCGA CCTGAGCCAG TTCGCCCAGC AGCAGAGCCG CGCCAGTGCT TTCATCCTGT CGATCGACGA CAACGAGTTC ACCCACGAGG GGCCCGAACT CGCGCCGGCC GTGCTGAACC TGCGCCAGTT CATCCGCGAG ATCCGCCGCA AGAACCTGGA GATTCCGATC TACCTTTACG GCGAGACCCG CACCTCGCAA CACCTGCCCA ACGACGTGCT GCGCGAGCTG CACGGCTTCA TCCACATGTT CGAGGACACG CCCGAGTTCG TGGCCCGCCA CATCATCCGC GAGGCCAGGA GCTATCTCGA CGGCCTGGCG CCGCCATTCT TCAAGGCATT GGTCGACTAC GCGCAGGACG GTTCCTATTC CTGGCACTGC CCTGGCCACA GCGGCGGCGT GGCGTTCCTG AAGAGCCCGG TCGGGCAGAT GTTCCACCAG TTCTTCGGCG AGAACATGCT GCGCGCCGAC GTCTGCAACT CGGTCGACGA GCTCGGTCAG TTGCTCGACC ACACCGGCCC GGTGGCTCAG AGCGAGCGCA ATGCGGCCCG CATCTTCAAC GCAGACCACT GCTTCTTCGT CACCAACGGC ACCAGCACCA GCAACAAGAT GGTCTGGCAC CACACCGTGG CGCCCGACGA CGTGGTGGTG GTGGACCGTA ACTGCCACAA GTCCATCCTG CACGCGATCA TCATGACCGG CGCGGTGCCG GTGTTCCTGC CGCCGACGCG CAACCACCTG GGCATCATCG GCCCGATCCC GAAGGCCGAG TTCGAGCCCG CGGCGATCCG CAAGCGCATT GCCGCCAACC CGCTGCTCGC GCATGTGGAC CCGGCCACCG TCAAGCCGCG CATCCTGACG TTGACGCAAA GCACCTACGA CGGCGTGCTC TACAACACCG AGACCATCAA GGGACTGCTC GACGGCTGGA TCGACACGGT GCATTTCGAC GAGGCCTGGC TGCCTCACGC TGCCTTCCAC AAGTTCTACG GCAGCTACCA CGCGATGGGC AAGAACCGTC CGCGGCCGAA GGAAGCGGTG GTCTATGCCA CGCAGTCGAC CCACAAGCTG CTGGCCGGCA TCAGCCAGGC TTCTCAGGTG CTGGTGCAGG ATGCCCAGAA CACCAAGCTC GACCGCCACC TGTTCAACGA AGCCTATCTG ATGCATACCT CGACGTCGCC GCAGTACGCG ATCATCGCGA GCTGCGACGT CGCGGCGGCG ATGATGGAGC CCCCCGGAGG AACCGCACTG GTGGAGGAGA GCATCCAGGA AGCGCTCGAC TTCCGGCGTG CGATGCGCAA GGTCGACAAG GAATTCGGCA AGGACTGGTG GTTCAAGGTC TGGGGCCCCG ACAAGCTGGC CGAGGACGGC ATCGGCAAGC CCGAGGACTG GATGATCAAG GCCGACGCCA AGTGGCACGG CTTCGGTCCG CTGGCCGAAG GCTTCAACAT GCTCGACCCG ATCAAGTCGA CGCTTGTGAC GCCGGGACTC GACGTGGCCG GCAAGTTCGC CAAGACCGGC ATCCCGGCCT CGATCGTCAC CAAGTTCCTG GCCGAGCATG GCGTGATCGT CGAGAAGACC GGGCTGTACT CGTTCTTCAT CATGTTCACG ATCGGCATCA CCAAGGGCCG GTGGAACACG CTGCTGACCG CGCTGCAGCA GTTCAAGGAC GACTACGACA AGAACGCGCC GCTATGGCGC ATCCTGCCGG AGTTCTGCGC CGCCCACCCG CGCTACGAGC GCATGGGGCT GCGCGACCTA GCGCAGAGCA TCCACGAGGC CTACGTCAAG GGCGATATCG CCCGGCTGAC CACCGAGATG TACCTGTCGG ACCTGCAGCC GGCGATGAAG CCCAGTGAGG CCTACGCCCA CATCGCGCAC CGCAAGACCG AGCGAGTGGA GATCGAGAGC CTGGAAGGGC GCATCACCAC CTCGCTGCTG ACACCCTATC CACCGGGCAT CCCGCTGCTG ATCCCGGGCG AGCGCTTCAA CAAGAAGATC GTCGACTACC TGCGCTTCAC CCGCGACTTC AACCGTCGAT TCCCCGGTTT CGACACCGAT GTGCACGGTT TGGTCGAGGA GGAAACCGAC AGCGGCGAGC GCCGCTACGC CGTGGACTGC GTGAAGCAGT GA
|
Protein sequence | MQHFRFPIVI IDEDFRSENT SGLGIRALAD AIVKEGFEIL GVTSYGDLSQ FAQQQSRASA FILSIDDNEF THEGPELAPA VLNLRQFIRE IRRKNLEIPI YLYGETRTSQ HLPNDVLREL HGFIHMFEDT PEFVARHIIR EARSYLDGLA PPFFKALVDY AQDGSYSWHC PGHSGGVAFL KSPVGQMFHQ FFGENMLRAD VCNSVDELGQ LLDHTGPVAQ SERNAARIFN ADHCFFVTNG TSTSNKMVWH HTVAPDDVVV VDRNCHKSIL HAIIMTGAVP VFLPPTRNHL GIIGPIPKAE FEPAAIRKRI AANPLLAHVD PATVKPRILT LTQSTYDGVL YNTETIKGLL DGWIDTVHFD EAWLPHAAFH KFYGSYHAMG KNRPRPKEAV VYATQSTHKL LAGISQASQV LVQDAQNTKL DRHLFNEAYL MHTSTSPQYA IIASCDVAAA MMEPPGGTAL VEESIQEALD FRRAMRKVDK EFGKDWWFKV WGPDKLAEDG IGKPEDWMIK ADAKWHGFGP LAEGFNMLDP IKSTLVTPGL DVAGKFAKTG IPASIVTKFL AEHGVIVEKT GLYSFFIMFT IGITKGRWNT LLTALQQFKD DYDKNAPLWR ILPEFCAAHP RYERMGLRDL AQSIHEAYVK GDIARLTTEM YLSDLQPAMK PSEAYAHIAH RKTERVEIES LEGRITTSLL TPYPPGIPLL IPGERFNKKI VDYLRFTRDF NRRFPGFDTD VHGLVEEETD SGERRYAVDC VKQ
|
| |