| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A1888 |
|---|
| Symbol | |
|---|
| ID | 4786768 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | - |
|---|
| Start bp | 2021533 |
|---|
| End bp | 2023440 |
|---|
| Gene Length | 1908 bp |
|---|
| Protein Length | 635 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640090458 |
|---|
| Product | Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase |
|---|
| Protein accession | YP_001021081 |
|---|
| Protein GI | 124267077 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0441] Threonyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00418] threonyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0150098 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGTGA TCACGCTTCC CGACGGCTCG CAACGCGAGT TCCCCGGCCC GGTCACCGTG
GCCGAGGTCG CGGCATCGAT CGGCACCGGG CTCGCGAAGG CGGCGCTGGG CGGCCGTGTC
GACGGCAAGC TGGTCGACAC GGGCCATCGC ATCGAGGGCG ATGCACGGCT CGCCATCGTC
ACCGACAAGG ATGCCGACGG CCTCGACCTG ATCCGCCACT CGACGGCCCA CCTGCTGGCG
TACGCAGTGA AGGAACTGTT CCCCGAAGCG CAGGTGACGA TCGGACCGGT CATCGAGAAC
GGCTTCTACT ACGACTTCTC GTACAAGCGC CCGTTCACGC CGGAGGATCT GGCGGCCATC
GAGGCCAAGA TGACGGAACT GGCGAAGAAG GACGAGAAGG TCGAGCGCCG CGTGCTGCCG
CGCGACGAGG CCGTGGCGTA CTTCAAGTCG ATCGGCGAGG ACTACAAGGC CGAGATCATC
GCCGGCATTC CGGCCGGCCA GGATGTGTCG CTGTACCGTG AAGGGCGGTT CGAGGACCTG
TGCCGCGGCC CGCACGTGCC GAGCACGGGC AAGCTCAGGC ACTTCAAGCT GATGAAGGTG
GCCGGCGCCT ACTGGCGCGG CGACCACCGC AACGAGATGC TGCAGCGCAT CTACGGCACG
GCCTGGGCCA GCAAGGACGA ACTGCAGCAG TATCTGCACA TGCTGGAGGA GGCCGAGAAG
CGCGATCACC GCAAGCTCGG CCGCGAACTC GACCTGTTCC ACCTCGACGA GCACGCGCCG
GGCCTCGTGT TCTGGCACCC GAAGGGCTGG ACGGTTTGGC AGCAGGTCGA GCAGTACATG
CGCGCGGTCT ACCGCGACAA CGGCTATCTC GAGGTCAAGG GGCCGCAGAT TCTCGACCAG
GGTCTGTGGG AGAAGACCGG ACACTGGGAC AAGTACAGGG AGAACATGTT CGTCACGGAG
TCGGAGAAGC GTGATTACGC GCTCAAGCCG ATGAACTGCC CGGGCCACAT CCTCATCTAC
AAGCAGGGCA TCAAGAGCTA TCGCGACCTG CCGCTGCGTT ATGGCGAGTT CGGGCAGTGC
CACCGCAACG AACCCACCGG CGGCCTGCAC GGCATCATGC GGGTGCGCGG CTTCACGCAG
GACGACGGAC ACATCTTCTG CACCGAGGAG CACATCCTGC CGGAGTGCGT GGCCTACACG
GCCTTGCTGC AGAAGGTCTA CAAGGACTTC GGCTTCAACG ACATCATCTA CAAGGTCGCC
ACCCGGCCCG AGAAGCGGAT CGGCTCCGAT GCGGTCTGGG ACAAGGCCGA GCACGCGCTG
ATGGAGAGCC TGCGGGCGTC GGGCTGCGAA TTCGTCGTGT CGCCGGGTGA TGGCGCGTTC
TACGGCCCGA AGATCGAGTA CACGCTGAAG GACGCCCTGG GTCGCCAGTG GCAGTGCGGC
ACGATGCAGG TCGATTTCTC GCTGCCGGAG CGCCTGGATG CGGTCTACGT GGCCGAAAGC
GGAGAGCGCT TGTTCCCGGT GATGCTGCAC CGGGCGATCG TCGGCAGCCT CGAGCGCTTC
ATCGGCATCC TCATCGAACA GCATGCCGGC GCGCTACCGG CGTGGCTCGC CCCGGTGCAG
GTGATGGTGC TCAACATCAC CGACGGGCAG GCCGACTACG CCGCAGAGAT TGCGAAAACG
CTGCAAAAAC AAGGAGTTAG AGCCGGCGTC GATTTGCGCA ACGAGAAAAT CACGTATAAA
ATCCGAGAGC ATTCCATGCA AAAGCTTCCG TACATCCTTG TCGTTGGCGA CAAGGAAAAG
GCTGCGGGGG CCGTTGCGGT GCGCGCCCGG GGTAACCAAG ACCTCGGCGT GATGCCTCTA
GATGCCTTTT CCCAGAGGAT GGCTAGCGAC ATCGCCCACA AGGTGTGA
|
|---|
| Protein sequence | MIVITLPDGS QREFPGPVTV AEVAASIGTG LAKAALGGRV DGKLVDTGHR IEGDARLAIV
TDKDADGLDL IRHSTAHLLA YAVKELFPEA QVTIGPVIEN GFYYDFSYKR PFTPEDLAAI
EAKMTELAKK DEKVERRVLP RDEAVAYFKS IGEDYKAEII AGIPAGQDVS LYREGRFEDL
CRGPHVPSTG KLRHFKLMKV AGAYWRGDHR NEMLQRIYGT AWASKDELQQ YLHMLEEAEK
RDHRKLGREL DLFHLDEHAP GLVFWHPKGW TVWQQVEQYM RAVYRDNGYL EVKGPQILDQ
GLWEKTGHWD KYRENMFVTE SEKRDYALKP MNCPGHILIY KQGIKSYRDL PLRYGEFGQC
HRNEPTGGLH GIMRVRGFTQ DDGHIFCTEE HILPECVAYT ALLQKVYKDF GFNDIIYKVA
TRPEKRIGSD AVWDKAEHAL MESLRASGCE FVVSPGDGAF YGPKIEYTLK DALGRQWQCG
TMQVDFSLPE RLDAVYVAES GERLFPVMLH RAIVGSLERF IGILIEQHAG ALPAWLAPVQ
VMVLNITDGQ ADYAAEIAKT LQKQGVRAGV DLRNEKITYK IREHSMQKLP YILVVGDKEK
AAGAVAVRAR GNQDLGVMPL DAFSQRMASD IAHKV
|
|---|
| |